PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g001741m

Common Name

CISIN_1g001741mg, LOC102606710

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 1019aa MW: 113947 Da PI: 7.5825

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g001741m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.3	4.7e-09	245	304	21	81
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 + r+k ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y orange1.1g001741m 245 STRAKTRADKDREVAEFLQRHGVNRDAKTSGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 304 556788899999*************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	2.38E-14	843	1004	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.1E-6	861	1003	No hit	No description
CDD	cd00180	8.64E-11	867	999	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1019 aa Download sequence Send to blast
MGDNKGDTTK KQKSQQPQQL QQQQQQPQQQ QLSSSPKNPL EESTEKGQHH HQQPPAVVVT 60 GAPYISAPLY VPIGPTSSSP FEQQFEPVNP KRQRYNSSQW KLLPSPSQQQ QQKQQAQMAI 120 LTTESSPSPT TLPITNPQSQ AHTTTASSSD TASSPPHSPI PSLSAASGQE TNRPELLGEQ 180 FHPQFRKGKY VSPVWKPNEM LWLARAWRIQ YQGGGGSNGS GSSSRVDHHQ PESTGQGEVA 240 AAAQSTRAKT RADKDREVAE FLQRHGVNRD AKTSGTKWDN MLGEFRKVYE WERGGEREQV 300 GKSYFRLSPY ERKLHRLPAS FDEEVFEELS QFMGSRMRST SQSRAASSVF VSSDHDNRST 360 RALPPPPPFK EDELSLSARA KQLVMTSGGE AFFHGGRGSL LGFESSLDVG SKELRRIGRI 420 RMTWEESVSL WAEEGEHQRG RIKLQGSSFL NADELTFFDD AMVACNMEAF EEGTLRGFSV 480 DRFVPGQQVK VFGRRKSSSG SASASSAGFF ERVQFPFTEP SIRFTPWEYQ DPSDYYVGCL 540 RVPPTTLPSL FELSWHLQEP PPEEFRFPIR KDVYRDLPQG KEIFFTTSTE LLDCRAITYD 600 ILSPIVRGNN PSLSFSTAAS RDSFIGLWDD CINRVVSKFC SSEMVIVRKP SSSSISSPEP 660 LQDQWPNVTG FVRNLCLWRG EETDQLKEGQ LDPSSSIVEK LLWTYMDLPY LFGYYAVGYI 720 VTFCALSRSQ DRVVRTDLYS LDLSSPVERL KALIPCYRIA GLLPLLADRC FNSSSSIISN 780 GGGGYKQYPF SDFERIDLGS GNIIEMTPNT VTRFFSSKRK WAAVKQIYDF LDHRIPHAEA 840 IYESSEKDLA LVFKPRGCKL KPTSCEQLVE ALKYVTKALV ALHDLSFMHK DLSWDKVMRR 900 SDRENEWFVS GFDEAASAPQ IYPQLVAAVA GGVEARGRHA PEMGRPGLHG VKVDVWGVGQ 960 LVKTCGLSNV PKMLRELQNR CLDQNPELRP TAADCYHHLL QLQSSLSVAA ASSSTAPY*

Sequence ? help Back to Top

Protein Sequence Length: 1019 aa Download sequence Send to blast

MGDNKGDTTK KQKSQQPQQL QQQQQQPQQQ QLSSSPKNPL EESTEKGQHH HQQPPAVVVT  60
GAPYISAPLY VPIGPTSSSP FEQQFEPVNP KRQRYNSSQW KLLPSPSQQQ QQKQQAQMAI  120
LTTESSPSPT TLPITNPQSQ AHTTTASSSD TASSPPHSPI PSLSAASGQE TNRPELLGEQ  180
FHPQFRKGKY VSPVWKPNEM LWLARAWRIQ YQGGGGSNGS GSSSRVDHHQ PESTGQGEVA  240
AAAQSTRAKT RADKDREVAE FLQRHGVNRD AKTSGTKWDN MLGEFRKVYE WERGGEREQV  300
GKSYFRLSPY ERKLHRLPAS FDEEVFEELS QFMGSRMRST SQSRAASSVF VSSDHDNRST  360
RALPPPPPFK EDELSLSARA KQLVMTSGGE AFFHGGRGSL LGFESSLDVG SKELRRIGRI  420
RMTWEESVSL WAEEGEHQRG RIKLQGSSFL NADELTFFDD AMVACNMEAF EEGTLRGFSV  480
DRFVPGQQVK VFGRRKSSSG SASASSAGFF ERVQFPFTEP SIRFTPWEYQ DPSDYYVGCL  540
RVPPTTLPSL FELSWHLQEP PPEEFRFPIR KDVYRDLPQG KEIFFTTSTE LLDCRAITYD  600
ILSPIVRGNN PSLSFSTAAS RDSFIGLWDD CINRVVSKFC SSEMVIVRKP SSSSISSPEP  660
LQDQWPNVTG FVRNLCLWRG EETDQLKEGQ LDPSSSIVEK LLWTYMDLPY LFGYYAVGYI  720
VTFCALSRSQ DRVVRTDLYS LDLSSPVERL KALIPCYRIA GLLPLLADRC FNSSSSIISN  780
GGGGYKQYPF SDFERIDLGS GNIIEMTPNT VTRFFSSKRK WAAVKQIYDF LDHRIPHAEA  840
IYESSEKDLA LVFKPRGCKL KPTSCEQLVE ALKYVTKALV ALHDLSFMHK DLSWDKVMRR  900
SDRENEWFVS GFDEAASAPQ IYPQLVAAVA GGVEARGRHA PEMGRPGLHG VKVDVWGVGQ  960
LVKTCGLSNV PKMLRELQNR CLDQNPELRP TAADCYHHLL QLQSSLSVAA ASSSTAPY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ453914	7e-90	DQ453914.1 Toona ciliata var. pubescens clone TC12 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490281.1	0.0	uncharacterized protein LOC102606710
TrEMBL	A0A067FD44	0.0	A0A067FD44_CITSI; Uncharacterized protein
STRING	XP_006490281.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	orange1.1g001741m
Entrez Gene	102606710