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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001425m | ||||||||
Common Name | CISIN_1g001425mg, LOC102612367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 1080aa MW: 119827 Da PI: 8.8743 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23 | 1.4e-07 | 69 | 125 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++e+F+ + +s++e +e++++ g+t +qVk +F +R++ +k orange1.1g001425m 69 KRPRDLLNPKAVKYMQEVFALKDAISKKESREISAQFGVTVTQVKDFFASQRTRVRK 125 799***************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.365 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-5 | 68 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.24E-5 | 69 | 125 | No hit | No description |
Pfam | PF00046 | 4.5E-5 | 69 | 125 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 69 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-7 | 69 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.20.930.10 | 4.4E-6 | 250 | 345 | IPR017923 | Transcription factor IIS, N-terminal |
SuperFamily | SSF47676 | 1.33E-6 | 251 | 346 | IPR017923 | Transcription factor IIS, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1080 aa Download sequence Send to blast |
MEALKENSME IEIGSSAESF QKFLDSQSEL FHSQIEKLQN VVVTQCRLTG ANPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQEVFALK DAISKKESRE ISAQFGVTVT QVKDFFASQR 120 TRVRKLVRLS KEKAIKSDAR KDSHNVMVPV SSDSVIPISS DYVIPTDPVP SSSACPTSVI 180 PVNPIPLNSI GPLKVDEAPS CSGRDECQLG LDDLDKHFVE NFFSLMRKEE TFSGQVKLME 240 QILRIENSSI LYWFLTKGGV MILATWLSQA ADEEQTSVLI VILNVLCHLP LQKALPEQMS 300 AILQSVKRLR YYRASDLSNR ANVLLSKWSK MFSRSQALKK HGAKHSTDSQ NELILKQSIG 360 EIMADESWLS SSNASENSLA TLCESSESFR KSESPQSVKL LTASSDDSGR KNILGVSSSY 420 NRERRKTQFV EQPGQKSAGR SLQASRLAPV GQARPMSADD IQKAKLKAMY KRQNKYGKTS 480 FLSNGINEVK AEGLEKSTTQ ATNFPPISKV LVRPHIEEFK KSVTPEPKIS SRPEAPLDPE 540 QKKDVEMPPE EKLKIVFKEP SEEKQKIGVK EPPQEKQKME VKESSQEKWL RVQIPWQTPP 600 EVKLNTHWRV GNGENSKEVE VQKNRIHRET ETICHKIQEI PCNPKEPWDL EMDYDDTLTP 660 ELPIEQPPDA DSVEETQFPS DNVTLNNAAP SLPIPSQIAP PPQIANASAS AAEPDLELLA 720 VLLKNPELVF ALTTGQAGNL SSEDTVKLLD MIKSGGAGAG LASNVNGMRG KVEEKVEVSL 780 PSPTPSSNPG TSGWRQDVVR NPFSRGSPME SNVVLSSLEV ASTEKLHTTN VIRSGISAMN 840 VTIPQQPTSA MHPSLHQTIP ERQLHSVVPS LRQSHSISSP IVQTQAMKNL PNASPSYISN 900 VKAAPMHINA PERQPVSHPS STLIPTSARS QPQLQPQQPH MSNPTHVASL YPSRQPMGNS 960 GPASESWQAS QRLASNSRYQ VNQNNYNGSF GGPMQRRQVL SGPPRERNGY AGNDGFESWS 1020 PDNSPTRPPE YEPRRNLQEP RMNSGWSNGP DRSRQWNTSE QREVRDHNKY GYTWRDRRH* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apex, root apex, leaf primordia and floral buds. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269|PubMed:10363371}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024955203.1 | 0.0 | homeobox protein LUMINIDEPENDENS | ||||
Swissprot | Q38796 | 0.0 | LUMI_ARATH; Homeobox protein LUMINIDEPENDENS | ||||
TrEMBL | A0A067HH03 | 0.0 | A0A067HH03_CITSI; Uncharacterized protein | ||||
STRING | XP_006479899.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10876 | 24 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 0.0 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001425m |
Entrez Gene | 102612367 |
Publications ? help Back to Top | |||
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