PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001409m
Common NameCISIN_1g001409mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 1084aa    MW: 122434 Da    PI: 5.9325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001409mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08427471246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        ++WT eE++ l+  +++ G  +W  Ia+ +g++Rt+ qc  r+q 
  orange1.1g001409m 427 NPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQR 471
                        69*****************************************96 PP
2Myb_DNA-binding48.12.6e-15479525148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        r  WT+eEde+l  av+ +G  +W ++a+t+  gRt+ qc +rw+k l
  orange1.1g001409m 479 RREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTL 525
                        678****************************9.************975 PP
3Myb_DNA-binding50.74.2e-16533576246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        grW ++Ed++l+ a  ++G+++Wk+Ia+ ++ gRt  qc++rw +
  orange1.1g001409m 533 GRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVN 576
                        8******************************.***********87 PP
4Myb_DNA-binding431e-13584626145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        r  WT++Ed++l  a+k++G   W+++a+ ++  Rt++qc  rw 
  orange1.1g001409m 584 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWK 626
                        789*****************99.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0014325422IPR001005SANT/Myb domain
PROSITE profilePS500906.249326420IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-10328344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-10393427IPR009057Homeodomain-like
SuperFamilySSF466891.61E-16402474IPR009057Homeodomain-like
PROSITE profilePS500909.036421473IPR017877Myb-like domain
SMARTSM007173.8E-8425475IPR001005SANT/Myb domain
PfamPF002498.5E-8427471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-10428474IPR009057Homeodomain-like
CDDcd001674.73E-6428473No hitNo description
SuperFamilySSF466897.59E-20456528IPR009057Homeodomain-like
PROSITE profilePS5129422.109474529IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-18477531IPR009057Homeodomain-like
SMARTSM007173.3E-13478527IPR001005SANT/Myb domain
CDDcd001676.19E-11481525No hitNo description
PfamPF139217.7E-15482543No hitNo description
SMARTSM007171.2E-14531580IPR001005SANT/Myb domain
SuperFamilySSF466892.47E-25531625IPR009057Homeodomain-like
PROSITE profilePS5129413.741531578IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-21533584IPR009057Homeodomain-like
CDDcd001678.45E-12534578No hitNo description
PROSITE profilePS5129422.59579632IPR017930Myb domain
SMARTSM007171.8E-13583631IPR001005SANT/Myb domain
PfamPF002496.8E-12584626IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-17585627IPR009057Homeodomain-like
CDDcd001676.31E-10586628No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1084 aa     Download sequence    Send to blast
MSHRNDYDDG EEFSGSENDD AFDEDMEALR RACMIIRADA DDLEKTDYHH LPDAAAPSAT  60
AADEWSSDGE GDLELVRSIQ NRLALSNDLC QPLSLEALCT LPPVVSDDDE EDDFETLHVI  120
QKRFSAYDSA DNNKSSVEVH ESASVVASGE DKNSNNLFEN RIDSCEEARN DETLTNLPQP  180
CASSTEWHQS DECNRLSVLS QKQSSNFPKS AQVFIDAIKK NRSYQKFIRS KLTQIESRIE  240
ENNKLKERVK ILKDFQVSCR KVTGRALSQK KDLRVQLISS SCNSRKSKDS EGTNKKLSAL  300
NYGPAENSQV ANYKMAMSKS PLSLHRKKWS KKENENLRKG IRQQFQEMML QLSVDRFSVP  360
EGSATDTNSL DSILASIKDL EVTPEMIRDF LPKVNWDQVA SMYVQGRSGA ECEARWLNFE  420
DPLINHNPWT VEEEKSLLLI IQEKGITDWF DIAASLGTNR TPFQCLARYQ RSLNACILRR  480
EWTKEEDEQL RIAVEAYGES NWQSVASTLK GRTGTQCSNR WNKTLHPSRE RQGRWNPDED  540
QRLIVATMLF GPRNWKKIAQ FVPGRTQVQC RERWVNSLDP SVKRSEWTEQ EDLRLEAAIK  600
EHGYCWSKVA SALPSRTDNQ CWRRWKALHP EAVPLFLEAK KIQKTALVSN FVDRERERPA  660
LRPNDFIPIP MLESAFQPEE PNASKKRKRK SSRKPESGKE NDDCNTQKKI KPNRCRKEAE  720
VCSEEVLGIT NSDVMDISDQ QDATQKKKKV KPRSTKKKAG CGSVATEKSS KKGSKSRPSA  780
ELDESSQSIL LQPPKKENQR NTNDDDNNFS LEDTDKARRQ GHGIKRCNEP SGECQGLACS  840
SCQQDASKTS KPRSKSHFKN RLQASDGDNI PLACFLHNKP KKKKLEVPKI ADQPCSSNAE  900
ETMGSLLPFE TVDQQSNEQP ILSQMQNGEV HTCHNAGTPE DMSLCKMRSS HLKDMQIMVV  960
SDECIGEDKV EGGVTDKVEG ATTSPSEPVS EAMPDINLED EIEACDFTLA SWLNRSSLST  1020
QSSLNNMQNV LASDMELERG DEVKGATITP HEPVREPMSN NHKDDIDDAD IPLAFLRRKL  1080
KKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-333986199159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-333986199159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684689KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024033739.10.0myb-like protein L isoform X1
TrEMBLA0A067F9Q70.0A0A067F9Q7_CITSI; Uncharacterized protein
STRINGXP_006490738.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65042744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1