PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001000m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 1194aa    MW: 135726 Da    PI: 8.6389
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001000mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002511021124323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         Cp   Cgk F ++ +L++H r+H
  orange1.1g001000m 1102 CPvkGCGKKFFSHKYLVQHRRVH 1124
                         9999*****************99 PP
2zf-C2H212.20.0005711601186123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         y+C    Cg++F+  s++ rH r+  H
  orange1.1g001000m 1160 YVCAepGCGQTFRFVSDFSRHKRKtgH 1186
                         899999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551410771099IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.36211001129IPR007087Zinc finger, C2H2
SMARTSM003550.004511001124IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.98E-611001136No hitNo description
Gene3DG3DSA:3.30.160.602.6E-511011123IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028011021124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-911241152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74111301159IPR007087Zinc finger, C2H2
SMARTSM003550.001411301154IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011321154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.89E-911401184No hitNo description
Gene3DG3DSA:3.30.160.601.8E-911531183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.46811601191IPR007087Zinc finger, C2H2
SMARTSM003550.6211601186IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011621186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MVGKNNGINP VKGYCSVKGK FASLYARNSS LSETDNIRTW NSQILSTDTE RQNTVQGDQS  60
SDQRLFSCVT CGILSFACVA VIQPREPTAR YLMSADCSFF NDWIVGSGVS GAFRAAGEDV  120
IASEHNSRSR WIGKSGRNSL YDVPVQSANQ IQAVDQSNET ISDRETKGDT SALNLLAITY  180
GNSSDSEEEQ VEPNVPMCDD KETKLTECLL ERKYQQNFHA AAAAAGSQDL SFISLDCEDE  240
ASLQISNVQP EFRRDYLNDK NPEMSECSVE FETDKHDCSK PNGFDGCFGD PIAASYASKC  300
APVIHGGENV EFSKAIVPVM NAEMSFAPRS DEDSSRMHVF CLEHAVEVEQ QLRPIGGVDI  360
FLLCHPDYPK MVAEAKLVAE ELGIDSLCDE ISFRVATKED EKRIHLSLDS EDAIPGNGDW  420
AVKLGINLFY SANLSRSPLY SKQMPYNSII YNAFGRSSPA SSPNKYDNGR RPARQRKVVA  480
GKWCGRVWMS NQAHPFLVQK DPEEQELERS FHAWTTPDEN FERKPESICQ TTSTLVTRKY  540
SRKRKMVAES VSTKKAKCID TEDAGSKYSL EGDTRIQQRR ILRNKPAKLM EKKDVDLPDS  600
SEVSSYQQKR SVSRRKQAKC IQREVGDSND ALPGNSLIQY RRIPKRKHAK CIGREDAVLD  660
DLTDDSSLKQ YRRIPRSKLA KHVAREDEVS DNSLRGTSDR QHTSIPKGKE FTCIDRDDAI  720
SDDSLQDNSR QLQFNRVPKS KQAEWIERED AASDDSLEDY PHRLQHKKIP NIKQPKCIES  780
EDPVLDNLLE KNTLRLHHQR ILKSKRAKCV EREDAVSDDL LEDSSHMLPR RSQKSKQAKW  840
MVREDAVSDD SLEDNSRQLY QRIPKSKPSK WIEREDAVSD DSLEDNSHQQ HKRIPRDKQS  900
KCTEMEDTVF YDSAEDNIQQ FRRIARKRAN FTEREDAVLY DLLDNKSHRR HCRTLRSKQL  960
RTETLRKMKQ ETPSHMKPGK SRLTKQETSR LVKQVTSRQH SVKSEQNAKL FDSVVEQELE  1020
GGPSTRLRKR IPKPQKEFET KPKEKNPAAK KKVKNASVVK APAGLNNAKI KDEEAGYHCD  1080
MEGCTMSFGT KQELVLHKKN ICPVKGCGKK FFSHKYLVQH RRVHLDDRPL KCPWKGCKMT  1140
FKWAWARTEH IRVHTGARPY VCAEPGCGQT FRFVSDFSRH KRKTGHSAKK SRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-691075119121137Lysine-specific demethylase REF6
6a58_A3e-691075119121137Lysine-specific demethylase REF6
6a59_A3e-691075119121137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1540545SRKRKM
2640646RRIPKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476948.10.0lysine-specific demethylase REF6
TrEMBLV4TIR40.0V4TIR4_9ROSI; Uncharacterized protein
STRINGXP_006476948.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-82relative of early flowering 6