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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g000285m | ||||||||
Common Name | CISIN_1g000279mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 1723aa MW: 194639 Da PI: 5.3724 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 34 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgL++rq ++WF+ rR k+kk orange1.1g000285m 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 20 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-16 | 24 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 32 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.7E-17 | 34 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.52E-13 | 35 | 87 | No hit | No description |
SMART | SM00571 | 1.1E-21 | 541 | 600 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.644 | 541 | 600 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.6E-17 | 542 | 597 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.9E-15 | 717 | 784 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 5.7E-8 | 927 | 969 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 9.2E-13 | 1110 | 1182 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1723 aa Download sequence Send to blast |
MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES 60 TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP 120 GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG 180 EPLREDGPIL GMEFDSLPPD AFGAPIGSSE QQKRSGHPYE SKIYDRYDTK SNKVIPRAHH 240 EYQSLSDQPY FHGSPIDGSR ARTSFLHANE PSSRVHGVQG HVARVRVLSQ QDKPAHIFSS 300 PNGGEDSLLQ RESTSNNRKN AQSTSHPIFG TEDPYLLSDG QTFNNDAEQR MEKKRKCDEA 360 RIAREVEANE IRIQKELERQ DNLRRKNEER MRKEMEKHER ERRKEEERLM RERQREEERS 420 LREQKREMER REKFLQKEYL RAEKRRLKEE LRMEKQAAKR KVAIEKATAR KMAKESMDLI 480 EDEQLELMDL AAASKGLSSI IHLDLETLQN LDSFRDSLSV FPPKTVRLKR PFSVQPWSDS 540 EENVGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDHES RLLGEIHLAL LKSIIKDIED 600 VARTPSTGLG MNQYCAANPE GGHPRIIEGA YAWGFDIRNW QQLLNPLTWH EIFRQLALSA 660 GFGPKLKKRS SKWANGKGCE DIVSTIRNGS AAENAFAWMR EKGLLLPRRS RHKLTPGTVK 720 FAAFHVLSLE GSKGLTVLEL ADKIQKSGLR DLTTSKTPEA SISVALTRDT KLFERIAPST 780 YCVRPAFRKD PADAEAILAA ARKKIRIFEN GFLGGEDADD VERDEDSECD VEEDPEVEDL 840 ATPSSANKNI DRYDEANTCL VSGKDNACND VALSVQNEVD KGFSSFSLND SKDARCQGTA 900 DNYVAVEDFG ASHLNQENIE IDESKPGESW IQGLAEGDYS HLSVEERLNA LVALIGIANE 960 GNSIRAVLED RLEAANALKK QMWAEAQLDK SRLKEENITK LDFTPAMGSK AETHLASSAA 1020 EGGQSPLPVF VDNKNEASPS LAEDQKPMFG SQVFQNHLSE FPNERTVAVQ DPSTGLDNLA 1080 TQQHGYASKR SRSQLKAYIA HMAEEMYVYR SLPLGQDRRR NRYWQFATSA SRNDPCSGRI 1140 FVELHDGTWR LIDTVEAFDA LLSSLDARGT RESHLRIMLQ KIETSFKDKV RRNLQGIDTV 1200 GQSWTAIKNE AAEMDVDPDF ASSDSPSSTV CGLNSDTLET SSSFRIELGR NEIEKKAALE 1260 RFQDFQWWMW RECFNSLSLC ASKNEKTRCR QLLVICDVCL DSYLCEDAHC PSCHRTFGAV 1320 DKSSKFSEHS IQCEEKTKLG LRDIHVSDSS LPLGIRLLKP LSAVIEAYIP PEALEASWTD 1380 ERRKTWGMKL NMSSSAEEVL QLLTILESGI KRSYLSSNFE TTKELLGSSF TCADPWSVPI 1440 LPWIPKTTAA VALRLLELDA SIMYVKPEKP EQFEEDKEAN ERVIPSRYLP LKNKEVVLKE 1500 LDQDRLVKEE NYSNLAGKRK NYRRGKGNRD HGWSRKYHKK TPSITADVGR RTAREHEGLN 1560 LRLKQQGLRT NGRGRRTVRK RADRTSKNET FQGQMGHMVI PDSSSGLHRN LDEEEWGVGK 1620 ERMINMEDAE NSNSAEAVDS DDNVQAVEYE QGNWEVGFNG ATNGWNRDVM EVSDEDEDAF 1680 GDDAGIEEAV DEYSEGNIDM SEASDQNGID DGVDSAASEY SD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 89 | RRLKDKKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467730.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A067GDF0 | 0.0 | A0A067GDF0_CITSI; Uncharacterized protein | ||||
STRING | XP_006467729.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g000285m |