PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g000281m | ||||||||
Common Name | CISIN_1g000279mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 1729aa MW: 195291 Da PI: 5.3436 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 34 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgL++rq ++WF+ rR k+kk orange1.1g000281m 34 PKRQMKTPFQLETLEKAYASETYPSESTRAELSEKLGLSDRQLQMWFCHRRLKDKK 89 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 20 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-16 | 24 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 32 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.7E-17 | 34 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.36E-13 | 35 | 87 | No hit | No description |
SMART | SM00571 | 1.1E-21 | 541 | 600 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.644 | 541 | 600 | IPR018501 | DDT domain |
Pfam | PF02791 | 2.6E-17 | 542 | 597 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.9E-15 | 723 | 790 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 5.7E-8 | 933 | 975 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 9.2E-13 | 1116 | 1188 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1729 aa Download sequence Send to blast |
MEVDSDAEKS NECKKFVVNN NNNNHSNEGQ QGKPKRQMKT PFQLETLEKA YASETYPSES 60 TRAELSEKLG LSDRQLQMWF CHRRLKDKKE KENPPKKMRK NVAVVMPESP IDELRAGAEP 120 GSDYGSGSGS GSSPYLMELR NAVGSSRGLM DDMPIVRRSY ESQQSIMELR AIACVEAQLG 180 EPLREDGPIL GMEFDSLPPD AFGAPIGSSE QQKRSGHPYE SKIYDRYDTK SNKVIPRAHH 240 EYQSLSDQPY FHGSPIDGSR ARTSFLHANE PSSRVHGVQG HVARVRVLSQ QDKPAHIFSS 300 PNGGEDSLLQ RESTSNNRKN AQSTSHPIFG TEDPYLLSDG QTFNNDAEQR MEKKRKCDEA 360 RIAREVEANE IRIQKELERQ DNLRRKNEER MRKEMEKHER ERRKEEERLM RERQREEERS 420 LREQKREMER REKFLQKEYL RAEKRRLKEE LRMEKQAAKR KVAIEKATAR KMAKESMDLI 480 EDEQLELMDL AAASKGLSSI IHLDLETLQN LDSFRDSLSV FPPKTVRLKR PFSVQPWSDS 540 EENVGNLLMV WRFFITFADV LGLWPFTLDE FVQAFHDHES RLLGEIHLAL LKSIIKDIED 600 VARTPSTGLG MNQYCAANPE GGHPRIIEGA YAWGFDIRNW QQLLNPLTWH EIFRQLALSA 660 GFGPKLKKRS SKWANVGDNH EGKGCEDIVS TIRNGSAAEN AFAWMREKGL LLPRRSRHKL 720 TPGTVKFAAF HVLSLEGSKG LTVLELADKI QKSGLRDLTT SKTPEASISV ALTRDTKLFE 780 RIAPSTYCVR PAFRKDPADA EAILAAARKK IRIFENGFLG GEDADDVERD EDSECDVEED 840 PEVEDLATPS SANKNIDRYD EANTCLVSGK DNACNDVALS VQNEVDKGFS SFSLNDSKDA 900 RCQGTADNYV AVEDFGASHL NQENIEIDES KPGESWIQGL AEGDYSHLSV EERLNALVAL 960 IGIANEGNSI RAVLEDRLEA ANALKKQMWA EAQLDKSRLK EENITKLDFT PAMGSKAETH 1020 LASSAAEGGQ SPLPVFVDNK NEASPSLAED QKPMFGSQVF QNHLSEFPNE RTVAVQDPST 1080 GLDNLATQQH GYASKRSRSQ LKAYIAHMAE EMYVYRSLPL GQDRRRNRYW QFATSASRND 1140 PCSGRIFVEL HDGTWRLIDT VEAFDALLSS LDARGTRESH LRIMLQKIET SFKDKVRRNL 1200 QGIDTVGQSW TAIKNEAAEM DVDPDFASSD SPSSTVCGLN SDTLETSSSF RIELGRNEIE 1260 KKAALERFQD FQWWMWRECF NSLSLCASKN EKTRCRQLLV ICDVCLDSYL CEDAHCPSCH 1320 RTFGAVDKSS KFSEHSIQCE EKTKLGLRDI HVSDSSLPLG IRLLKPLSAV IEAYIPPEAL 1380 EASWTDERRK TWGMKLNMSS SAEEVLQLLT ILESGIKRSY LSSNFETTKE LLGSSFTCAD 1440 PWSVPILPWI PKTTAAVALR LLELDASIMY VKPEKPEQFE EDKEANERVI PSRYLPLKNK 1500 EVVLKELDQD RLVKEENYSN LAGKRKNYRR GKGNRDHGWS RKYHKKTPSI TADVGRRTAR 1560 EHEGLNLRLK QQGLRTNGRG RRTVRKRADR TSKNETFQGQ MGHMVIPDSS SGLHRNLDEE 1620 EWGVGKERMI NMEDAENSNS AEAVDSDDNV QAVEYEQGNW EVGFNGATNG WNRDVMEVSD 1680 EDEDAFGDDA GIEEAVDEYS EGNIDMSEAS DQNGIDDGVD SAASEYSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 89 | RRLKDKKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467730.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A067GDP6 | 0.0 | A0A067GDP6_CITSI; Uncharacterized protein | ||||
STRING | XP_006449408.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g000281m |