PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32529.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 224aa    MW: 24488.6 Da    PI: 7.3919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32529.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-054668123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C+ C++ F++   L  H+++H
  mrna32529.1-v1.0-hybrid 46 YICGFCKREFKSAQALGGHMNVH 68
                             89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.18E-64372No hitNo description
PfamPF139122.0E-54670IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5964673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MQRNSGSCKS LVMTKAIDGD SNTNIKKNTE DDEVCMNVYP WPPRCYICGF CKREFKSAQA  60
LGGHMNVHRK DRAKLRSSPP ADWIGQYTHS TILNLNLKPN PNPTFVPSPP PSPPSPFSTA  120
STRQQLSPLT TSFSSVPSWI SQSSHPPPTF SSPSATCHTE NMKWLVGGNL SGPSLNLKSF  180
DLSSQMKINA ESQEDGCMRL DLEIGVLGGN SEDEIDLELR LGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-114168229superman protein
2l1o_A2e-114168229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32529.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU8309210.0GU830921.1 Fragaria virginiana subsp. virginiana Superman-like protein FRASUP3 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288457.11e-166PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLD5LGH11e-163D5LGH1_FRAVR; Superman-like protein FRASUP3
STRINGXP_004288457.11e-165(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42410.13e-21zinc finger protein 11