![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna32439.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 124aa MW: 13492.5 Da PI: 7.6151 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 109.2 | 2.4e-34 | 23 | 103 | 19 | 98 |
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 h+lPlarikki+k + edvkmis eaP+++skacelfi elt rsw + + krrtl+k d+a+av tdifdflv +v + mrna32439.1-v1.0-hybrid 23 HSLPLARIKKIMKkSGEDVKMISGEAPIVFSKACELFIEELTRRSWATTLQGKRRTLHKDDVASAVVATDIFDFLVSMVSE 103 99**********73579***********************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.5E-26 | 18 | 97 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.2E-31 | 20 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.4E-21 | 24 | 88 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 124 aa Download sequence Send to blast |
MRQAGKYSGF MMSGGISGRT GPHSLPLARI KKIMKKSGED VKMISGEAPI VFSKACELFI 60 EELTRRSWAT TLQGKRRTLH KDDVASAVVA TDIFDFLVSM VSETASHIED GTSPEEEEIV 120 RSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-34 | 23 | 101 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna32439.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300774.1 | 9e-86 | PREDICTED: nuclear transcription factor Y subunit C-9-like | ||||
Swissprot | Q8L4B2 | 3e-33 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2P6P754 | 6e-79 | A0A2P6P754_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004300774.1 | 4e-85 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08970.4 | 1e-35 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna32439.1-v1.0-hybrid |