PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32286.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 385aa    MW: 43562.7 Da    PI: 10.2821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32286.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-05143163323
                              ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                              C  Cg++F +k+ L++H r+H
  mrna32286.1-v1.0-hybrid 143 CRVCGRRFYTKEKLVNHFRVH 163
                              *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.2E-5140167No hitNo description
PROSITE profilePS5015711.281141168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-4142166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280143163IPR007087Zinc finger, C2H2
CDDcd061671.00E-9206293No hitNo description
PfamPF019362.6E-6210296IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.9E-5240280IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAIRRSRPLA KAQGDGPVHA LRRAGEAAGA IRPFAREAAR TFSSIENEGR RRQVLRHFQS  60
NPPLNSPSQP SVAIFWDLET RPPKSVSPFE AAGRLKTAAS SFGLVRHMIA YAPRHACNSV  120
PQVVGKIRKE RNRVVIRDEA NICRVCGRRF YTKEKLVNHF RVHESEHMKR LSQIESASGS  180
RRVKLVGKYA MKMEKYRNAV RDVMIPKQGN GLVSELKRAG FWVRSLPDKP RAGFVVVSDD  240
IVEMMDERRF ECLVLVSDDS EFVDVVMEAR RRCVKTVVVG DLGDGGLKRA ADSGFLWREI  300
LLGKAKKEAV SVVRKWKDSD ILKRLEWRYK PDEDRRVHRL DDGGDGGSED EEFESFVGGM  360
NESCLRNDDS RKWWELDSDA DAVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32286.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463765.10.0PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463766.10.0PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463767.10.0PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463769.10.0PREDICTED: uncharacterized protein LOC101312061
TrEMBLA0A2P6P7Z20.0A0A2P6P7Z2_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004300722.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-92C2H2 family protein