PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna32028.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 341aa    MW: 37896.7 Da    PI: 4.6921
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna32028.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19111161155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +g+W+AeIrd +     r  r +lg+++taeeAa  +++a+ +l+g
  mrna32028.1-v1.0-hybrid 111 KKFRGVRQRP-WGKWAAEIRDpF-----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 161
                              59********.**********66.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.46E-32111168No hitNo description
PfamPF008478.0E-13112161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-29112169IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21112169IPR016177DNA-binding domain
SMARTSM003809.5E-35112177IPR001471AP2/ERF domain
PROSITE profilePS5103223.196112169IPR001471AP2/ERF domain
PRINTSPR003673.7E-10113124IPR001471AP2/ERF domain
PRINTSPR003673.7E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNPAVKFSQH RNHTKLVSNS EAEGVRPRIV RISVTDGDAT DSSSDDEPET FFGRQRVKKY  60
VNEISIESCS REAEEEAAVC KSRTSRTVRK KTAGKTVAPV THRTLKPAPG KKFRGVRQRP  120
WGKWAAEIRD PFRRVRLWLG TYDTAEEAAM VYDNAAIQLR GPHALTNFHS PPAVTDEPDA  180
DIMSDVKPVI SYGYNSGEES HNTICSPTSV LRCPSPSNED VSSSPSPKHL QPKQEQQLQQ  240
VQDVQEDSCV SENFSELSDH TSFESFISDD IFDFQTTIPD FFEETSVFKE NNNSFCDFGN  300
FGDIFTESAM DFGFGSSGST TCDYFQDIGD LFASDPLVAL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21108168162ATERF1
3gcc_A1e-21108168162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna32028.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298872.10.0PREDICTED: ethylene-responsive transcription factor CRF2
TrEMBLA0A3S8T9100.0A0A3S8T910_FRAAN; Transcription factor ERF53
STRINGXP_004298872.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-48cytokinin response factor 2