PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31951.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 325aa    MW: 37251.5 Da    PI: 10.4587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31951.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.7e-1720110499
                              E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              + +p ++++   l++p +f+++h  +k+ +  tl+l+++s  s +v++  rk++g ++l++GW+eF ++  L +++++vF ++g+ 
  mrna31951.1-v1.0-hybrid  20 IILPGYSTE--HLRIPPRFIRKHiVNKPSKRATLKLKQSSQFSRNVEV--RKSRGDVYLKDGWQEFLRDACLGDKEILVFVYNGNL 101
                              444444443..49**********966677889****************..********************************9988 PP

                              EE..EEEEE-S CS
                       B3  89 efelvvkvfrk 99 
                              +f  +vkvf+k
  mrna31951.1-v1.0-hybrid 102 SF--NVKVFDK 110
                              88..9***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-2111113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-1913113IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-1515109No hitNo description
PROSITE profilePS508639.715111IPR003340B3 DNA binding domain
SMARTSM010193.0E-1317111IPR003340B3 DNA binding domain
PfamPF023629.0E-1526111IPR003340B3 DNA binding domain
PfamPF021780.57134143IPR017956AT hook, DNA-binding motif
SMARTSM003841.7134146IPR017956AT hook, DNA-binding motif
PRINTSPR009291.2E-8134144IPR017956AT hook, DNA-binding motif
PRINTSPR009291.2E-8173184IPR017956AT hook, DNA-binding motif
PRINTSPR009291.2E-8218228IPR017956AT hook, DNA-binding motif
PfamPF021780.038220231IPR017956AT hook, DNA-binding motif
SMARTSM003840.28220232IPR017956AT hook, DNA-binding motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVKIPRNAVE EKKPPCFFQI ILPGYSTEHL RIPPRFIRKH IVNKPSKRAT LKLKQSSQFS  60
RNVEVRKSRG DVYLKDGWQE FLRDACLGDK EILVFVYNGN LSFNVKVFDK NGCERMDFPN  120
IKTHQNPNST RSTKRPRGRP RKSSIANTAD MLKEVNEEEV YYSNNTEKST SNSTEMPYGR  180
PTKTTEENTK KHTSSPTKTT SQSSKRSPVG PTKKTSESTK RPRGRPRKYP VTLKDSAAGK  240
HILNSGFDVL KEVKEEKEDS QESGVLFKSK LQYFTSKILK LSQVYVCKAF YVENLSPPNY  300
DFVFLKNSEG TKWYKLQSEA FLLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227KRPRGRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31951.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458368.10.0PREDICTED: B3 domain-containing protein At5g18000-like isoform X4
TrEMBLA0A2P6PN111e-153A0A2P6PN11_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290391.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3410222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-12VERDANDI