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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna31908.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 203aa MW: 22963.4 Da PI: 9.2702 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.1 | 6.7e-18 | 124 | 200 | 15 | 97 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++p +f ++h +++ +++++++g++W+vk+ ++ ++ l++GW eF +an++k gD+++Fkl++r ++lvv+v+ mrna31908.1-v1.0-hybrid 124 NVSVPTDFSKKHL--PQGYYSIVVKNSKGQKWKVKV--VRSCTSVKLSGGWAEFRRANQIKCGDICTFKLVER--KTLVVHVV 200 5899*****9994..235568***************..9******************************9875..55588886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-4 | 5 | 57 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-19 | 108 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 108 | 200 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.606 | 110 | 202 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.95E-15 | 112 | 199 | No hit | No description |
SMART | SM01019 | 2.8E-7 | 114 | 202 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-16 | 123 | 200 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MQRRASKEPT FFKIIITGFN TDDLRIPPKF RRHMLNELSE TTTLELRGSS KCSWIVQGLT 60 IRKDLGEEQE STTIQVDAAV ENIRSCQSTE LVEIKEEEIE EEAATSHNSG FPSFASIMLN 120 HLYNVSVPTD FSKKHLPQGY YSIVVKNSKG QKWKVKVVRS CTSVKLSGGW AEFRRANQIK 180 CGDICTFKLV ERKTLVVHVV PK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna31908.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290347.1 | 1e-113 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2P6PMZ6 | 7e-53 | A0A2P6PMZ6_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004290347.1 | 1e-112 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24645.1 | 4e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna31908.1-v1.0-hybrid |