PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

mrna31903.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Protein Properties

Length: 202aa MW: 22941.4 Da PI: 10.3395

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna31903.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.9	3.3e-12	14	85	1	76
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 ffkv + ++ +l++p +f+++ ++ ++ l+l+ +s sW+vk+ +k+++ +++++GW+eF + n ++e mrna31903.1-v1.0-hybrid 14 FFKVIL--PGYSTEQLRIPPQFLKHLRKDLSSKANLSLNMSSQCSWNVKV--TKTKNDVYFKDGWQEFLNNNSVDE 85 778884..4555567******666555556778***********..******************9875 PP
2	B3	37.9	3.1e-12	117	195	17	99
E--HHH.HTT---..--SEEEEEETTS.-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesg.rsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + p f ++h + +++ + + + sg ++W +vkl + ++ ++++GW eF++++++ +gD++ F+l + e ++vv++++k mrna31903.1-v1.0-hybrid 117 STPTAFYSKHLS--AGNYKFAFVNISGgNKWyKVKL--VPSCQTAFMSAGWAEFARDKKIMVGDVCAFELLK--ENKMVVHILQK 195 557788888832..3556788888666566648999..*******************************876..56679999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.7E-16	8	85	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-13	8	84	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.66E-8	12	85	No hit	No description
PROSITE profile	PS50863	7.26	12	113	IPR003340	B3 DNA binding domain
SMART	SM01019	0.11	14	100	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-10	14	85	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.7E-15	97	194	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-14	98	195	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.30E-9	103	193	No hit	No description
SMART	SM01019	1.0E-4	105	196	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-9	119	195	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.855	119	196	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MVRKNGVNQK RPSFFKVILP GYSTEQLRIP PQFLKHLRKD LSSKANLSLN MSSQCSWNVK 60 VTKTKNDVYF KDGWQEFLNN NSVDEAADNT AKESAISFKS KYPHYKKAIN KTYCVYSTPT 120 AFYSKHLSAG NYKFAFVNIS GGNKWYKVKL VPSCQTAFMS AGWAEFARDK KIMVGDVCAF 180 ELLKENKMVV HILQKGSRSS Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna31903.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164887.1	1e-104	B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBL	A0A2P6PMT2	1e-103	A0A2P6PMT2_ROSCH; Putative transcription factor B3-Domain family
STRING	XP_004290392.1	9e-39	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14202	8	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49480.1	4e-11	related to vernalization1 1

Link Out ? help Back to Top
Phytozome	mrna31903.1-v1.0-hybrid