PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31594.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 168aa    MW: 18946.9 Da    PI: 10.4965
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31594.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551e-171060151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ie+   +qvtfskRrng++ KA+  S   daev vi+fs+tgkly +ss
  mrna31594.1-v1.0-hybrid 10 KKIEDLNAKQVTFSKRRNGLFRKAKRWSASYDAEVGVIVFSNTGKLYQFSS 60
                             6899999******************************************96 PP
2K-box21.97.1e-09831182661
                    K-box  26 keienLqreqRhllGedLesLslkeLqqLeqqLeks 61 
                              ++i+ L++   ++ G +L+ LslkeL +Le++L+++
  mrna31594.1-v1.0-hybrid  83 NRISALKSDCSRMRGRELDGLSLKELDELEKELNQG 118
                              68999****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-19261IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-16424IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-22576IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.712562IPR002100Transcription factor, MADS-box
PfamPF003194.7E-181158IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-162439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-163960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGPPRRSEIK KIEDLNAKQV TFSKRRNGLF RKAKRWSASY DAEVGVIVFS NTGKLYQFSS  60
TSMEHTLLRY NNCQTTTSVA RANRISALKS DCSRMRGREL DGLSLKELDE LEKELNQGKM  120
NNSLPRAGYS MLQAQMTLPV AVNRKEAINI KIYLIFAIVI VIIGRDD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12334KRRNGLFRKAKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31594.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301484.11e-63PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ392951e-28AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A2C9V7584e-34A0A2C9V758_MANES; Uncharacterized protein
STRINGXP_004301484.15e-63(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.18e-24AGAMOUS-like 18