PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna31068.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 23863.1 Da    PI: 8.322
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna31068.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.69.2e-201362251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +ie  s rqvtfskRr+g++ KA   Sv C+ae+avi+fs+t k+y +ss
  mrna31068.1-v1.0-hybrid 13 KIEHLSSRQVTFSKRRKGLFNKAGKFSVRCGAEIAVIVFSNTKKMYQFSS 62
                             79999*******************************************96 PP
2K-box30.31.7e-11991581271
                    K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                                + sl+  +a L++e++ L     +l+G +L+ +sl+eL++Le+q+ +++++i ++K +
  mrna31068.1-v1.0-hybrid  99 LSSDSLSAIAAVLQEENRALNLDGSRLKGLELDGMSLRELNELEKQIREGIESIEKRKID 158
                              445677788899*********99**********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-21463IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-16626IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.525764IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-23779IPR002100Transcription factor, MADS-box
PfamPF003191.8E-201360IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-162641IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-164162IPR002100Transcription factor, MADS-box
PfamPF014863.4E-6101158IPR002487Transcription factor, K-box
PROSITE profilePS512977.082101211IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MVMTCPRRTK IEKIEHLSSR QVTFSKRRKG LFNKAGKFSV RCGAEIAVIV FSNTKKMYQF  60
SSPSMEHILS RRNRVMKERA GGSVMESPEK KSQHEAPSLS SDSLSAIAAV LQEENRALNL  120
DGSRLKGLEL DGMSLRELNE LEKQIREGIE SIEKRKIDVE NYYQQPVYML EDSDRLDGNT  180
SNFFSGTSSS AISDCIESEL SKQFVDTCLH L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna31068.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288795.11e-155PREDICTED: agamous-like MADS-box protein AGL18
TrEMBLA0A2P6RPL21e-107A0A2P6RPL2_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004288795.11e-154(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3382122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-26AGAMOUS-like 18