![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna31023.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1131aa MW: 125125 Da PI: 8.5589 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 94 | 115 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G+Ck Gd+C FaHg mrna31023.1-v1.0-hybrid 94 SACPDFRK-GHCKKGDSCEFAHG 115 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.3E-5 | 90 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.826 | 91 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.615 | 125 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 13 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF103473 | 9.68E-25 | 559 | 785 | IPR020846 | Major facilitator superfamily domain |
PROSITE pattern | PS01022 | 0 | 625 | 649 | IPR018456 | PTR2 family proton/oligopeptide symporter, conserved site |
Pfam | PF00854 | 6.1E-101 | 636 | 1075 | IPR000109 | Proton-dependent oligopeptide transporter family |
SuperFamily | SSF103473 | 9.68E-25 | 866 | 1116 | IPR020846 | Major facilitator superfamily domain |
CDD | cd06174 | 7.93E-4 | 882 | 1100 | IPR020846 | Major facilitator superfamily domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006857 | Biological Process | oligopeptide transport | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005215 | Molecular Function | transporter activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1131 aa Download sequence Send to blast |
MASDSPTSPN SPYLPSEEAL SAALRRYLPS NNEGSDPDPD SPVDAYSGDH FRMFEFKVRR 60 CARGRSHDWT DCPFAHPGEE AQRRDPRKFH YSGSACPDFR KGHCKKGDSC EFAHGVFECW 120 LHPARYRTQP CKDGTSCKRR VCFFAHTPEQ LRVLPQQSPR GSNSPPMTRS VSRSLGLSSV 180 SEMVASLRKV KSLPTSWNVQ VGLVGSVGSP GFVSPRGSML QPGFCSLPST PTRIPTCSTA 240 GVLDFCDEGG TPVIQTGNVE GSRIRRMLAG IRLASPISMG DTLVIQTGDV ETGHLLTGSR 300 FGVGRSDITP MNDDFRMYIA NAEPQTGNYP LPLEISGDNS HLVRPLEQHL RSNCFVKLFV 360 TSEILGMVFE IIYQESHIMA YFFIWFVCAM IAMYVARLLA MIEGGMANRE QFAVYLRCFS 420 FLLLELLQYW GIHQGNYITA LKIILRVTGA IIGWWVVGVL QSYMDAFVNG KPPREFCAAV 480 ADLLEAQRAQ LLCSPSPSSA IPYVPSRDQS DGNDDKEKSQ IAYFFKRFFL LVNIVTLMAV 540 TEEKMSWTAA DAVDYKGFPA DKSRTGGWVS AALILGIEIC ERLSTMGIAV NLVTYLVGTM 600 HLPSSTSANI VTDFAGTSFL LCLLGGFLAD SFLGRYKTIA IFASIQSLGI VALAISVKLP 660 QLRPPHCDIT AANNDCQQAN EFQMGFLYLA LYMIALGIGG LKSSVSGFGT DQFDDKDDKE 720 KAQMAYFFNR FFFFISTGTL MAVTVLVYIQ DQVDRSLAYG ICSISMFIAI LVFFSGTKRY 780 RYKKSTGSPI VQIFQVIVAA VRKRKMPLPF DVALLYENYP EASRICHTDQ FRVDTHPVQF 840 SVSFLDKAAI VAEEDFERNA PAGSLPNPWK LCSVTRVEEV KMMVKLLPIW ATTIMFWTAY 900 AQMLTFSVEQ ASTMERSIGK FQIPAGSLTV FFVLAILITL AVNDRIIMPV WKKWKGQPGF 960 TNLQRIAIGL VLSTLGMAAA ALTEKKRLLV AKGMKTMSTG ALPISVYWLI PQFFLVGSGE 1020 AFIYTGQLDF FITQSPKGMK TMSTGLFLST IALGFFVSSF LVSIVRRFTG SKDGQGWLAD 1080 NINYGRLDCF YGLLSVLSVI NFVAYLVCAR WYKPRKPTKP SNGSSAEDKC * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4oh3_A | 0.0 | 538 | 1129 | 1 | 583 | Nitrate transporter 1.1 |
4oh3_B | 0.0 | 538 | 1129 | 1 | 583 | Nitrate transporter 1.1 |
5a2n_A | 0.0 | 538 | 1129 | 1 | 583 | PROTEIN NRT1/ PTR FAMILY 6.3 |
5a2n_B | 0.0 | 538 | 1129 | 1 | 583 | PROTEIN NRT1/ PTR FAMILY 6.3 |
5a2o_A | 0.0 | 538 | 1129 | 1 | 583 | NITRATE TRANSPORTER 1.1 |
5a2o_B | 0.0 | 538 | 1129 | 1 | 583 | NITRATE TRANSPORTER 1.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. {ECO:0000269|PubMed:15509836}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna31023.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the shoots by nitrate, but no changes in the roots. {ECO:0000269|PubMed:12668777}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458172.1 | 0.0 | PREDICTED: protein NRT1/ PTR FAMILY 6.2 | ||||
Swissprot | Q9SZY4 | 0.0 | PTR27_ARATH; Protein NRT1/ PTR FAMILY 6.2 | ||||
TrEMBL | A0A2P6RJ17 | 0.0 | A0A2P6RJ17_ROSCH; Putative proton-dependent oligopeptide transporter family, major facilitator superfamily | ||||
STRING | XP_004288806.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-86 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna31023.1-v1.0-hybrid |