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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
mrna30998.1-v1.0-hybrid |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family |
C3H |
| Protein Properties |
Length: 327aa MW: 36751.3 Da PI: 7.3736 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna30998.1-v1.0-hybrid | genome | GDR | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 30 | 8.8e-10 | 78 | 102 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +f G C+ G++C++aHg
mrna30998.1-v1.0-hybrid 78 YKTRLCANFKN-GSCRNGENCNYAHG 102
9**********.*************8 PP
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| 2 | zf-CCCH | 24 | 6.7e-08 | 140 | 162 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
++lC+ f + +C+yGdrC+F H
mrna30998.1-v1.0-hybrid 140 MKLCKKFNNGEECPYGDRCNFRH 162
689******66**********88 PP
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| 3 | zf-CCCH | 42.7 | 9e-14 | 218 | 244 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt++C+ + +tG C++G++C+FaHg+
mrna30998.1-v1.0-hybrid 218 WKTKICNKWEQTGKCPFGEKCHFAHGQ 244
8************************97 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 74 | 110 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.7E-8 | 75 | 108 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.8E-6 | 77 | 103 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.361 | 77 | 104 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.4E-7 | 78 | 102 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-4 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.02E-7 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.896 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 9.4E-9 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-5 | 140 | 162 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.3E-18 | 213 | 249 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.93E-11 | 215 | 248 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 8.5E-7 | 217 | 244 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.07 | 217 | 245 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 5.6E-11 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MPVQSLYVGG SDAVNCWPPI AMNNEDQHSQ FEQQGPPFKR PRNSEEPQSN PMPYPPMNNA 60
RLPPSNAPVN RGANNIFYKT RLCANFKNGS CRNGENCNYA HGIDDIRQPP PNWQELVTVR 120
DEDRPLTGNW EDDQKIIHRM KLCKKFNNGE ECPYGDRCNF RHEEPAKFRE DSSRYRENAA 180
ISIGTTGAPM PHASSTSLEE NRPNTGINTF LVTPKPYWKT KICNKWEQTG KCPFGEKCHF 240
AHGQEELQAP GMRVEAELMA SAPISTKPQA VPINDSSTLA MAAMPAAVNE EVQGKKCGFK 300
WRGSMKIKQI NRIYGDWLDD VPLVES*
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