PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna30690.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 1182aa    MW: 129291 Da    PI: 8.537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna30690.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17623721198
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+k l+ sd++k grlvlpkk+ae++   ++++e+  lt+ d+ g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F
  mrna30690.1-v1.0-hybrid 623 FEKMLSASDAGKIGRLVLPKKCAEAYfpPISHPEGLPLTVHDSLGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTF 707
                              89**************************555566777***************9989999999***9.******************* PP

                              EE-SSSEE..EEEEE- CS
                       B3  83 kldgrsefelvvkvfr 98 
                              ++ +  +++l v+ +r
  mrna30690.1-v1.0-hybrid 708 SRLE-PGGKL-VMGCR 721
                              *654.55544.54444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-28619723IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-19620719IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-21621722No hitNo description
SMARTSM010195.0E-20623723IPR003340B3 DNA binding domain
PROSITE profilePS5086310.236623724IPR003340B3 DNA binding domain
PfamPF023627.5E-15623721IPR003340B3 DNA binding domain
PROSITE profilePS5105013.098864914IPR011124Zinc finger, CW-type
PfamPF074963.7E-9869911IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 1182 aa     Download sequence    Send to blast
MYRTEMLMVS DHRSTTKISY RRKGRSRKSA KPKRHLPQAQ LVQNVSAVIP DYQQRQFQYF  60
QNPETKISYR RKGRSRKSAK PKRHLPQPQP QIQLVQNASA VIPDYQQRQF QYFQNPETRP  120
DPLFSTRGLY GWPIYHGAMS GVVGFDTVHG NGGSVGFGYG YNGVVGDGGA QNRGAGVYHE  180
ISNDRGFSGS FVGESVEVRP VPDHNNNSNS SSVVSSGGTF PMEHVLVASS TNSSSVGRSS  240
EASDQHLGAA PACIEGADMM MMSSGYSSPQ SEARTSMSSS AASSSSSSSK CCYNSECGEL  300
KPEHPRKAWR LRTGDCAELC DRCAVIYEEG RFCETFHVKA SGWRCCESCG KRVHCGCIVS  360
AQAFTLLDPG GIECVTCARK YIVLTSNPAW APTLLFHSPF SERPKDMSGK NWTQLAGSGP  420
VPWRQAPSFF NSSISSPDLH TRVPYDIDGS MGINKLNAGE RISVHPLEKK KAEDFSERLM  480
KVNLAIGTPV TFENGNSGNK RMEQSRSCLN VSQQPISLKE EQSTPQFVLS VPYVSASDTN  540
GQKNGQVVVT GTNLQPALPM ANQFHGIRGA SYNGVELSGD TQIRYAKSGL DARGRLSRYW  600
PRFTDKELQQ ISGDSNSVIT PLFEKMLSAS DAGKIGRLVL PKKCAEAYFP PISHPEGLPL  660
TVHDSLGKEW VFQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDIVTFSRL EPGGKLVMGC  720
RKALTAPSDQ ENDTNKMGNG ASANADVGIT DTKSGEVFSN AELAVRSTVA KGDKSGYVSK  780
DVVGAKSLIS RKRKNSILGS KSKRLRIEKE DLIELKITWE EAQGLLRPPP KHVPTVVVIE  840
GFEFEEYEDG PILGKPTLFT TGSKGEKIQW AQCEVCCKWR KLPVNALLPS KWTCSDNSWD  900
PDRSLCSAAQ ELTIEELEDL LPRNTVAPKN VKASKQDPDS IEALEGLDTL ADLAILGEGE  960
SLPSAAQATT KHPRHRPGCS CIVCIQPPSG KGPKHKQTCI CNVCSTVKRR FRTLMMRREK  1020
NKSEKEAETT RKKQQQQQFQ DDDTLLSGNT GSSSPNNRVE VLDLSDDDFN RTKSPTPPYK  1080
GQIDLNIQPE REEDLSPGSD SGGMIKLLQD ATERYLRQQR QSLSISVGGE RSLGNKSQLA  1140
GIEAGGEPLG NIAILGNNNH DGGNDHPATL SIKASASMTA T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C5e-636017261126B3 domain-containing transcription repressor VAL1
5yzz_C5e-636017261126B3 domain-containing transcription repressor VAL1
5z00_C5e-636017261126B3 domain-containing transcription repressor VAL1
5z00_G5e-636017261126B3 domain-containing transcription repressor VAL1
5z00_K5e-636017261126B3 domain-containing transcription repressor VAL1
5z00_M5e-636017261126B3 domain-containing transcription repressor VAL1
6j9a_A6e-636017262127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna30690.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460287.10.0PREDICTED: B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2P6Q3L20.0A0A2P6Q3L2_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004293496.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-145HSI2-like 1