 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
mrna29666.1-v1.0-hybrid |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
| Family |
Trihelix |
| Protein Properties |
Length: 319aa MW: 35189.1 Da PI: 4.7433 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| mrna29666.1-v1.0-hybrid | genome | GDR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 53.8 | 5e-17 | 32 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
+W+++ + +Li+a ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk +k++ +++ s++p+
mrna29666.1-v1.0-hybrid 32 CWSEDATSTLIDAWGRRYVELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSGG---FNSSWPF 114
7****************************************99999***************************997...5667*** PP
trihelix 82 fdqle 86
fd+l+
mrna29666.1-v1.0-hybrid 115 FDRLD 119
***98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MGDLTESLTP STATATPNSS SNPRPMPVRE DCWSEDATST LIDAWGRRYV ELNRGNLRQK 60
DWQEVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKVE KARVSGGFNS SWPFFDRLDS 120
LIGSTVKKPS PSLSPPVAVP LPLAYRKPSP ARPVVTAVAL PQKRSASAAA LNEGFFRMNY 180
SAVAAAAAAE NDDDDDEDEE DEEEEEDNDD GDEEAEVEKE RDSDGEIGGG GGGGVGGEGL 240
KRLARAIERF GEVYQRVEAD KIRQMTELEK QRMQFAKDLE IQRMSMFMDT QVQLERIKHG 300
KRPGSNGEPN LSALFCML*
|
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G58630.1 | 1e-40 | sequence-specific DNA binding transcription factors |
