PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29562.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 520aa MW: 54762.6 Da PI: 8.9492 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H mrna29562.1-v1.0-hybrid 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + mrna29562.1-v1.0-hybrid 138 WKCDKCSKKYAVQSDWKAHSKIC 160 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.24E-7 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.3E-5 | 62 | 84 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 103 | 133 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-4 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.24E-7 | 133 | 158 | No hit | No description |
SMART | SM00355 | 150 | 138 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MPTDLDNSST ASGEASVSSS GNQTAPAPKP ITKKKRNLPG MPDPDAEVIA LSPKTLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEVSC VHHDPSRALG 120 DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EESARGPSQT QNVKSNSESD PKVQRANSPP PPPPAQASVP SQPSSSSAPS 240 QPPILPIQSS VKSLFFGLIL SLLVPVPELP ENPPEDAPVV TQRKGHCSSS NSSSSNGSTS 300 SSVFASLFAS STTSGASLQP PQPPAFTDLI RAMGQPDLPT DLAPSASIEP ISLGLSTSHA 360 SSIFGTAGQE RRQYAPPPQP AMSATALLQK AAQMSATSNA SLLRGFGIVS SSSSSAEQES 420 MQWNQRQTES DNASIAAGLG LGLPCDGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNN 480 PNGGLSALIT SISGGLDVAA AAASFGSGEY SGKDLARSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 134 | 202 | 3 | 71 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 134 | 202 | 3 | 71 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29562.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300616.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 0.0 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A2P6RMK7 | 0.0 | A0A2P6RMK7_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004300616.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-107 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29562.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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