PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna29552.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 473aa MW: 53998.2 Da PI: 6.2799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna29552.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	39	61	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ rH r H mrna29552.1-v1.0-hybrid 39 HVCHNCGWPFPNPHPSARHRRAH 61 79******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	41	61	IPR007087	Zinc finger, C2H2
TIGRFAMs	TIGR01640	1.2E-21	170	387	IPR017451	F-box associated interaction domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MDHKDHSSGS LPLSESFKGF CFWFLTNWCL LGQEGHGVHV CHNCGWPFPN PHPSARHRRA 60 HKKICGTVEG YKVAGNAQLS VSDDDPKTPS ELPVKSLVRF TSVSKRWLTI ILFDPDFTTL 120 LRRNKTLTRR LLVYSRKGNP GKLKSRNSEM TSFKKVKFPF QRRFVTLLGS CNGLVFVVDE 180 NDVHSFRVHV WNPLTGFVKE LPIPGFSTDF DLELRAYGVG YLPATDEYKV ILSYAPVEVE 240 LDVNNETEEE YNRRVEEDEK LNFSKVMSLN DGIWRSIEAP KDCYSNHQQG TLVNGWLQWL 300 QTPLSDEIVA FDLAREEFRE IEMPNFGPKK IRDLSELRFC FVGCLEGCLC VLRYPVIDAC 360 DSIDFWVMRE YGVVESWTKL FTFRFSNPEW SMRPLLITEN STVALKWNAD IWSRNVFSAD 420 ASTGVRISHK QEGEEEPCVN ILGGNWDNVI EYEEGLASIG GYNGVHHNAS QS*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MDHKDHSSGS LPLSESFKGF CFWFLTNWCL LGQEGHGVHV CHNCGWPFPN PHPSARHRRA  60
HKKICGTVEG YKVAGNAQLS VSDDDPKTPS ELPVKSLVRF TSVSKRWLTI ILFDPDFTTL  120
LRRNKTLTRR LLVYSRKGNP GKLKSRNSEM TSFKKVKFPF QRRFVTLLGS CNGLVFVVDE  180
NDVHSFRVHV WNPLTGFVKE LPIPGFSTDF DLELRAYGVG YLPATDEYKV ILSYAPVEVE  240
LDVNNETEEE YNRRVEEDEK LNFSKVMSLN DGIWRSIEAP KDCYSNHQQG TLVNGWLQWL  300
QTPLSDEIVA FDLAREEFRE IEMPNFGPKK IRDLSELRFC FVGCLEGCLC VLRYPVIDAC  360
DSIDFWVMRE YGVVESWTKL FTFRFSNPEW SMRPLLITEN STVALKWNAD IWSRNVFSAD  420
ASTGVRISHK QEGEEEPCVN ILGGNWDNVI EYEEGLASIG GYNGVHHNAS QS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna29552.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011465848.1	0.0	PREDICTED: F-box/kelch-repeat protein At3g23880-like, partial
STRING	XP_004301893.1	0.0	(Fragaria vesca)

Link Out ? help Back to Top
Phytozome	mrna29552.1-v1.0-hybrid