![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna29538.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 24788 Da PI: 6.9667 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 56 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ mrna29538.1-v1.0-hybrid 56 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASQLGLDPRQVAVWFQNRRARWKN 110 45699************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 118.8 | 3e-38 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kkr+l++eqv+lLE +F +e+kLe+e+K +la++Lgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a++++ e+++Le+e+++L mrna29538.1-v1.0-hybrid 56 KKRKLTEEQVTLLELNFGNEHKLESEKKDRLASQLGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKTAHENVIVEKCKLESEMQKL 141 9************************************************************************************* PP HD-ZIP_I/II 88 reelke 93 +e+l+e mrna29538.1-v1.0-hybrid 142 KERLSE 147 *99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.536 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-17 | 54 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.78E-18 | 55 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.3E-17 | 56 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.37E-15 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MTTTINNQVV DQDHMLLISQ MYPDVYTQIV PQVAATKPRR RRKKSKSGEA DGAGAKKRKL 60 TEEQVTLLEL NFGNEHKLES EKKDRLASQL GLDPRQVAVW FQNRRARWKN KKLEEEYSTL 120 KTAHENVIVE KCKLESEMQK LKERLSETEK EIHRLSERVE GGGSSNSPSS SLSMEANIGG 180 PPPFFGEFGV EEYDDVFYMP QNNYINAMEW MNPYM* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 39 | 57 | RRRKKSKSGEADGAGAKKR |
2 | 41 | 58 | RKKSKSGEADGAGAKKRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna29538.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300609.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein ATHB-40 isoform X1 | ||||
Swissprot | O23208 | 9e-83 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2P6RMK2 | 1e-112 | A0A2P6RMK2_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004300609.1 | 1e-160 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36740.1 | 9e-71 | homeobox protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna29538.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|