PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna29441.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 176aa MW: 19702.2 Da PI: 5.6285 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.8 | 9.5e-14 | 77 | 170 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 +++++l+ + l + +fa+e+ + + +++ l+++ g +W ++++ +s + + Wk+Fv++n+Lk+gD +vF+l+++ mrna29441.1-v1.0-hybrid 77 MQKSYLSGC-LKVQGDFAKECvcaS----GFRDVNLQNSAGTTWPAIFSVDVYSVGqRQGRVSWKSFVQDNHLKVGDACVFELMKK 157 666777777.99999******6531....4469************999886655542334568*******************9965 PP ..SEE..EEEEE- CS B3 88 ..sefelvvkvfr 98 + +++v++fr mrna29441.1-v1.0-hybrid 158 gcEVPTFKVHIFR 170 2555566777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.4E-18 | 65 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-16 | 66 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-14 | 71 | 170 | No hit | No description |
SMART | SM01019 | 2.2E-5 | 73 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-12 | 77 | 171 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.11 | 103 | 172 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MEIDYPMNSR QDEGEELDDD HDASVEILDV VPFKKRGRTE LASLWMKANE HNVDTGDGAF 60 LRATSFKYSN PHIVVRMQKS YLSGCLKVQG DFAKECVCAS GFRDVNLQNS AGTTWPAIFS 120 VDVYSVGQRQ GRVSWKSFVQ DNHLKVGDAC VFELMKKGCE VPTFKVHIFR AEDAN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna29441.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024177872.1 | 4e-89 | uncharacterized protein LOC112183768 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19243 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna29441.1-v1.0-hybrid |