PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna28785.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 1036aa    MW: 113939 Da    PI: 8.5671
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna28785.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.43.9e-16825871455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  mrna28785.1-v1.0-hybrid 825 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 871
                              6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF514302.49E-7498430IPR023210NADP-dependent oxidoreductase domain
CDDcd066601.11E-7998428IPR023210NADP-dependent oxidoreductase domain
Gene3DG3DSA:3.20.20.1004.7E-82104434IPR023210NADP-dependent oxidoreductase domain
PfamPF002481.1E-57110428IPR023210NADP-dependent oxidoreductase domain
PRINTSPR000691.1E-5144168IPR020471Aldo/keto reductase
PROSITE patternPS000620259276IPR018170Aldo/keto reductase, conserved site
PRINTSPR000691.1E-5259276IPR020471Aldo/keto reductase
CDDcd000831.30E-17816875No hitNo description
SuperFamilySSF474597.59E-20818885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152821870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-13825871IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-19825879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17827876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0009535Cellular Componentchloroplast thylakoid membrane
GO:0009941Cellular Componentchloroplast envelope
GO:0010287Cellular Componentplastoglobule
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
MEKSSVKNLE ACVRSSRPRY PVSLPETGST FYMFNVYNPL GSVLSTKLFN FREPLTFCRI  60
GGVMAMHVSS AGFSIFSHRR VNRVRAVASE NVSIEEQKVQ LGASELKVTK LGIGAWSWGD  120
TSYWNNFDWD DRKMKAAKNA FDASIDGGIT FFDTAEVYGS RASFGAINSE TLLGRFIKER  180
KEKDPEVEVA VATKFAALPW RLGRQSVLSA LKGSLSRLGL SSVELYQLHW PGVWGNEGGS  240
SVTSILYLTI ICPGYLDGLG DAVEQGLVKA VGVSNYREKR LRDAYEKLKK RGIPLASNQV  300
NYSLIYRAPE ENGVKATCDE LGITLIAYSP IAQGVLTGKY TPENIPTGPR GQIYTRDFLT  360
KLQPLLNRIK EIGEKYSKTP TQVALNWLIA QDNVVPIPGA KNAEQAMEFA GALGWKLNDD  420
EVTELRSLAS EIRPNSQALY VTTQSLLSDL CANVPVLPNW SLRLFGPFQV SGNSVCSDMN  480
SCIPNWNFEG DLPSTNQKKP SGPDHELVEL LWRNGQVVLH SQTNRKPGLN PNESRQVQKH  540
DQMRVGGFYG NSGNLIHDEE AVSMIQYPLE DSFDKDFCSH FFSELPSCDP LEIEKPIKQF  600
GEEKFVKFDA SNATHLVSSS PQTNVKSSTG VAYPENPMPP PRFQISNPTE KNQNLGGLGK  660
VVNFSQFSAL GRGDIGSSRK QIRGTEPGKL NQAEVRECSM MTVGSSYSGS NQVPNDFDVS  720
RASSNGDGTT VFSTGTLYNN VQKMMPLSEG GMTETLDPTL TSSSGGSGSS FGRGKQSNVV  780
NSNKRKGRDA EDSECQSKAA EIESAAGNKP APRSGSSRRT RAAEVHNLSE RRRRDRINEK  840
MRALQELIPH SNKTDKASML DEAIEYLKSL QLQLQVMWMG GGMTPMMFPG VQHYMSRMGM  900
GMGPPAMPSM HNPIHLPRVP IVDQCMTVAP PTNPAVMCQT PVLNPVDYRN QMQNPSFQEQ  960
YARLMGFHHM QTMSQPMNMF RFGSQPLPQS QMMAPTVMNT GPLSGGAATN EGLSGKMSKS  1020
FQPLLGKVYI VYCSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dan_A4e-3010042952742,5-diketo-D-gluconic acid reductase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1829834ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna28785.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303901.10.0PREDICTED: transcription factor PIF4-like
RefseqXP_011467621.10.0PREDICTED: transcription factor PIF4-like
TrEMBLA0A2P6S0J70.0A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_004303901.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF632822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-54phytochrome interacting factor 4