PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna28676.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C2H2

Protein Properties

Length: 258aa MW: 29279.9 Da PI: 8.0788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna28676.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	7e-06	104	123	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ mrna28676.1-v1.0-hybrid 104 FSCHVCFKTFNRYNNLQMHM 123 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.37E-5	99	126	No hit	No description
PROSITE profile	PS50157	10.055	104	131	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-4	104	123	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	106	126	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.22E-5	170	208	No hit	No description
PROSITE profile	PS50157	8.538	208	241	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEPSEISSRF ARTLNLFPNE KDPNEVPDSH DLGFSSSENP TSFSESDHNK EDEVTVALHI 60 GLPEYSDGSA NSTEKEVSDH ENVTAEQKYW IPTREQIIIG FTHFSCHVCF KTFNRYNNLQ 120 MHMWGHGSQY RRGPESLKGT QPRAMLGLPC YCCAEGCKNN IDYPRAKPLK DFRTLQTHYK 180 RKHGIKPFMC RKCGKLLAVK GDWRTHEKNC GKRWLCSCGS DFKHKRSLKD HMKAFGSGHS 240 PFPPTSLDED STAASFV*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna28676.1-v1.0-hybrid

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004301931.1	0.0	PREDICTED: protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-111	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2P6PIV7	1e-179	A0A2P6PIV7_ROSCH; Putative transcription factor C2H2 family
STRING	XP_004301931.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Phytozome	mrna28676.1-v1.0-hybrid

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]