PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27486.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 524aa MW: 58143 Da PI: 6.5029 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.9 | 9.4e-07 | 270 | 291 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H mrna27486.1-v1.0-hybrid 270 FCAICGKGFKRDANLRMHMRGH 291 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.46E-5 | 267 | 294 | No hit | No description |
PROSITE profile | PS50157 | 11.884 | 269 | 296 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 269 | 291 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 0.0012 | 270 | 291 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.8E-6 | 270 | 320 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 271 | 291 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 53 | 318 | 351 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 22 | 356 | 378 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010044 | Biological Process | response to aluminum ion | ||||
GO:0010447 | Biological Process | response to acidic pH | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MDHKDKVCAD TWAKDLRNKT CSDRPKFANF SAHQHQNKWE DPSILDYGIR IEPSFQKLSQ 60 PSEDQTSLPH NSNNEKTIAD GEDVQMNEIF HASKIQDWDP STMLTNLSFL EQKIHQLQDL 120 VHLIVGRRGQ VLGRPDELVA QQQQLITADL TSIIAQLIST AGSLLPSVKH TLSSASASAV 180 QFGQLGGSFV SSGAGTEASV KLQMNCGSKL PEQPNQTDPI SNYGTELNYH IEEHESKDEE 240 DADEGENLPP GTYEILQLEK EEILAPHTHF CAICGKGFKR DANLRMHMRG HGDEYKTPAA 300 LAKPNKDSSS EPTLIKRYSC PYAGCKRNKD HKKFQPLKTI LCVKNHYKRT HCDKSYTCSR 360 CNTKKFSVIA DLKTHEKHCG KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDETKTA 420 VGASEHGEGS EAPNRVGSIN FNFGSTLPSA GGLVQNIMDV KESVDDPTCY FSPLNFDTCN 480 FDGFHEFPRP PFEDSESSFS FLMPGSCNYT HKTGGESNSK QVE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00196 | ampDAP | Transfer from AT1G34370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27486.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290434.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Refseq | XP_004290435.1 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2P6PR67 | 0.0 | A0A2P6PR67_ROSCH; Putative transcription factor C2H2 family | ||||
STRING | XP_004290434.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 0.0 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna27486.1-v1.0-hybrid |