PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27422.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 334aa    MW: 37376.9 Da    PI: 5.6271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27422.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-1469120155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++k+ls  +++ ++ +YI +Lq
  mrna27422.1-v1.0-hybrid  69 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKRLSIPATVSRVLKYIPELQ 120
                              6789**************************...9******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.06268119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1169120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-1469137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1569138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.37E-1169124No hitNo description
SMARTSM003531.6E-974125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLALSPPLFS TIGWPLEDHS ISHDHDNYYS AESSLLHFPT TLQPQFDQLD HSTPSTAVSG  60
ESNISSMVKK LNHNASERDR RKKINNLYSS LRSLVPADHA KRLSIPATVS RVLKYIPELQ  120
QQVEGLIQKR DELLSNMSKQ ENVILQEEKQ LQSTARRSGS SLSAVSTSRL SDTELAIQIS  180
TVKSTHNIIS RILQSLEEDG LEILNASTFE SSGGRVFYNL HLQVDMFYRL ECENLSHKLM  240
SFYGLVGGED CGEGLSFKRR ERDAGARVGI WREGGNGDVE YWPEVFLALE YVVEAAVADL  300
VYGGEVDEGP VGDVVAMRRW RRSRESKESE SRC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27422.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290411.11e-177PREDICTED: transcription factor ORG2-like
TrEMBLA0A2P6PQW61e-156A0A2P6PQW6_ROSCH; Putative transcription factor bHLH family
STRINGXP_004290411.11e-176(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.19e-54bHLH family protein