PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27406.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 310aa    MW: 34269.3 Da    PI: 4.8761
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27406.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.55.9e-16166202135
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++Cg ++  Tp +Rrgp+g+++LCnaCGl+++ kg+
  mrna27406.1-v1.0-hybrid 166 CQHCGISEksTPAMRRGPNGPRSLCNACGLRWANKGT 202
                              *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.8232459IPR010399Tify domain
SMARTSM009791.2E-52459IPR010399Tify domain
PfamPF062005.8E-92858IPR010399Tify domain
PfamPF062034.1E-1597138IPR010402CCT domain
PROSITE profilePS5101712.87897139IPR010402CCT domain
SMARTSM004016.9E-15160213IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14164207IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.66E-11164215No hitNo description
CDDcd002028.96E-15165208No hitNo description
PfamPF003205.9E-14166202IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEAVDVEPIQ ARPYEGEESE GEAAVSRTSE LTIAFEGEVF VFPAVTPDKV RAVLLLLGAR  60
DIPASHIPSS VPSSGFSLQQ NSMGIGDISR NSKLSRRFAS LVRFREKRKE RCFDKKIRYT  120
CRKDIAERMH RKNGQFASLK DPFKPVAGNC DSSDSTSCPE SVLRRCQHCG ISEKSTPAMR  180
RGPNGPRSLC NACGLRWANK GTLRDLTKAG RDISFDQNEL ESPEENKPIA LNAEVPPLRL  240
GDQDMLETTE AGRNQVSIQM ENSSVNLDEQ ENLDELANAS GTTFEIPANF EEQVVDFYDC  300
NMETNWGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27406.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290404.10.0PREDICTED: GATA transcription factor 24-like isoform X2
TrEMBLA0A2P6PQT30.0A0A2P6PQT3_ROSCH; Putative transcription factor TIFY family
STRINGXP_004290404.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-59ZIM-like 1