PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27105.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 197aa    MW: 21937.6 Da    PI: 9.0808
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27105.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF793.3e-25957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             k+ien   rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e 
  mrna27105.1-v1.0-hybrid  9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57
                             68********************************************996 PP
2K-box49.91.4e-1784163988
                    K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                              + e+++   ++e + Lk+eie Lq+ +R + G + +++sl eLq Le++Le  + ++Rs K+ +l++  ++lq k +e++
  mrna27105.1-v1.0-hybrid  84 VMETQTLDAKKECNLLKQEIEILQKGLRYMFGGGAGTMSLDELQVLEKHLELWIYHVRSAKEGILTAANKYLQDKIEENS 163
                              6678888999*****************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.749161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-28177IPR002100Transcription factor, MADS-box
CDDcd002657.14E-41274No hitNo description
PRINTSPR004046.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.5E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.32589175IPR002487Transcription factor, K-box
PfamPF014867.8E-1490160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK  60
GSMQGLIERY MKTKPARVPQ AEPVMETQTL DAKKECNLLK QEIEILQKGL RYMFGGGAGT  120
MSLDELQVLE KHLELWIYHV RSAKEGILTA ANKYLQDKIE ENSGVTNLMP VATDTPYPLT  180
IPNDDIISLL GSNFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-15187187MEF2 CHIMERA
6byy_B3e-15187187MEF2 CHIMERA
6byy_C3e-15187187MEF2 CHIMERA
6byy_D3e-15187187MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna27105.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301468.11e-141PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ388415e-66AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLM5Y0Z51e-115M5Y0Z5_PRUPE; Uncharacterized protein
STRINGXP_004301468.11e-141(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-68AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]