PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna27018.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GeBP

Protein Properties

Length: 306aa MW: 34707.1 Da PI: 10.3378

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna27018.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.8	2.6e-12	6	45	33	72
DUF573 33 didafyefvkksisfkvsksqlveKirrLKkKfkkkvkka 72 d+dafyefv++s+s+ v ksq+ eK++++KkK++++ k + mrna27018.1-v1.0-hybrid 6 DMDAFYEFVNDSLSVSVRKSQMQEKVKQMKKKYNNMAKMK 45 9**********************************99872 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-9	6	46	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MINGVDMDAF YEFVNDSLSV SVRKSQMQEK VKQMKKKYNN MAKMKTSMPK QGHELEGDKA 60 KGLAYRQASK EAFASVALFY ETVVFDNALK KLGFWESFVK QCLGLTDKSN RAELNDRKKP 120 LTLLLLELSK PLPPNSRSSR NLASLNLLPP FPARLGLNPT SCLKGRMSGC SSPSRLGLWR 180 PQLIRWRHGR NVLTEVTKDV GKKTKKNAQE AERNEEFEKS KSQMQEKVKR MKKKYNNMGS 240 KAKGLAYRQA SKEAFTSVAL LYETYLGCME GEECYSVERE ENVNYKVNVK LADYKFHNKP 300 VSAAS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna27018.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Link Out ? help Back to Top
Phytozome	mrna27018.1-v1.0-hybrid