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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna27007.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 698aa MW: 76053.1 Da PI: 6.5857 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 280 | 300 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg mrna27007.1-v1.0-hybrid 280 PCPEFRK-GACRRGDMCEYAHG 300 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.8E-19 | 8 | 159 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.18E-18 | 20 | 159 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.7E-10 | 52 | 123 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.016 | 57 | 87 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 17.502 | 57 | 158 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.90E-15 | 59 | 135 | No hit | No description |
PROSITE profile | PS50088 | 11.568 | 92 | 127 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2.4E-4 | 92 | 124 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 275 | 301 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 280 | 300 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 280 | 302 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-4 | 308 | 338 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 37 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 698 aa Download sequence Send to blast |
MNHLTVATED SFSRALEFAS DNDVQGFKQL IDHDTSSINQ IGLWYSRQKG SKHIVSEQRT 60 PLMVAATYGS VDVVKLIVSN PEADVNFSCG LDQSTALHCA ASGGSVNALD IVKLLLSAGA 120 DPSCLDASGH RPIDVIVVHP KLQSMRSVLE ELLSKKASDC SVSDCSLHLS IITSNSDSLA 180 LSSSSENGLQ SPSESVSSPA SKFTELLVNS NQEKKEYPYD PSLPDIKNSI YATDEFRMFS 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTTEELRPLY VSTGSAVPSP RSSASGPTVM 360 DMAAALSLLP GSPSSVSAMS PSPFSQSMSP SGNGISQSSV AWPHPNVPTL HLPGSNLQSS 420 RLRSSLSARD MPPENLNLLR ELDAQQQLLN ELNCFSQPRP SPISVGRSGR SKTLTPSNLE 480 ELFSAEFSSS PRYSDHTAAS VFSPTHKSAL LNQFQQQSML SPINTNGMSP KTVDHPLLQA 540 QFGVQSPGRM SPRSVEPISP MGSRLSAFSQ LENSHQQLRS LSSRDLGSKN FSSMVGSPVN 600 SWSNGKLDWS VNGEAEGRLR RSSSFELRNN GEEPDLSWVQ SLVKESPPEM MKDKFAAPAS 660 SAVASGEVLN SNSQIESIDH SVLDAWLEQM QIDQLVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna27007.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468826.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A2P6S7I5 | 0.0 | A0A2P6S7I5_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004306535.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | mrna27007.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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