PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26659.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 178aa    MW: 19075.7 Da    PI: 9.1588
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26659.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00153254123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ F++   L  H  +H
  mrna26659.1-v1.0-hybrid 32 FECKTCNRQFPSFQALGGHRASH 54
                             89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.3E-930102No hitNo description
PfamPF139122.9E-133156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8273259IPR007087Zinc finger, C2H2
SMARTSM003550.163254IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
PfamPF139121.3E-979104IPR007087Zinc finger, C2H2
PROSITE profilePS501578.99580107IPR007087Zinc finger, C2H2
SMARTSM003550.6180102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MANCLMLLSR GNDYDSLIST TSSPTSSPSR VFECKTCNRQ FPSFQALGGH RASHKKPRLA  60
GGDGSSSDSQ SSSPSKPKTH ECNICGLEFA IGQALGGHMR RHRAAVTDND HRNLNGAQSK  120
PMMGLSSNLG QGVVPVLKKT NSSRRVLCLD LNLTPFENDM EILGIGKTTP PLVEFIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26659.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307547.11e-128PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A2P6SK745e-90A0A2P6SK74_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004307547.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-38C2H2 family protein