PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

mrna26491.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 489aa MW: 53342.6 Da PI: 5.9552

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26491.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	79.3	7e-25	371	473	1	106
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lL+ cA+a+++gd + ++lL+r++ +asp+gd mqR+a yf+ +L+ar+a+s++++y+al +++ts ++ l+a++lf mrna26491.1-v1.0-hybrid 371 LRTLLTVCAQAIAAGDERTGNELLKRIRLHASPEGDGMQRMACYFADGLEARMAGSGTQIYRALIAKPTS---AADILKAYHLFLA 453 5789*************************************************************999...9******** PP GRAS 87 vsPilkfshltaNqaIleav 106 ++P+ k+s++ N++I++ mrna26491.1-v1.0-hybrid 454 ACPFRKLSNFFSNKTIMNGW 473 **************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.145	345	488	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.4E-22	371	473	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MVMDQSLSGF YGSSNELLKF RDQALSDSMN KKLDSGFRNG SGSNKVLGHK YATTVQVPPT 60 QIPTNSALPL SMIPDGDSNE DCDFSDVVLK YISQMLMEED MEEKTCMYQE SAALHSAEQS 120 FYELIGEKHH LPPDLTPTAD QNHGSPDESH SLHSSCCSTT STSTSSSIRD CDLLEFKYLN 180 VASQSTSQSS HASSNGTGNF VDGFVESPVS TLRVPDFFNE TDSILQFQKG FEEASKFLPN 240 GNSLIVDLES NTPLLKELNT EATDMTAKVD KKNNREYPSA GSRGKKHPYH DDEILEGERS 300 NKQSSVSTES AVSPEMFDMV LLNCGQSESA LREALQNGTK KNIPQSGQSK GPSGGKSRGK 360 KQGGKKDVVD LRTLLTVCAQ AIAAGDERTG NELLKRIRLH ASPEGDGMQR MACYFADGLE 420 ARMAGSGTQI YRALIAKPTS AADILKAYHL FLAACPFRKL SNFFSNKTIM NGWKGRIVYA 480 LSSWRAAY*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MVMDQSLSGF YGSSNELLKF RDQALSDSMN KKLDSGFRNG SGSNKVLGHK YATTVQVPPT  60
QIPTNSALPL SMIPDGDSNE DCDFSDVVLK YISQMLMEED MEEKTCMYQE SAALHSAEQS  120
FYELIGEKHH LPPDLTPTAD QNHGSPDESH SLHSSCCSTT STSTSSSIRD CDLLEFKYLN  180
VASQSTSQSS HASSNGTGNF VDGFVESPVS TLRVPDFFNE TDSILQFQKG FEEASKFLPN  240
GNSLIVDLES NTPLLKELNT EATDMTAKVD KKNNREYPSA GSRGKKHPYH DDEILEGERS  300
NKQSSVSTES AVSPEMFDMV LLNCGQSESA LREALQNGTK KNIPQSGQSK GPSGGKSRGK  360
KQGGKKDVVD LRTLLTVCAQ AIAAGDERTG NELLKRIRLH ASPEGDGMQR MACYFADGLE  420
ARMAGSGTQI YRALIAKPTS AADILKAYHL FLAACPFRKL SNFFSNKTIM NGWKGRIVYA  480
LSSWRAAY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26491.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307492.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A2P6SKM3	0.0	A0A2P6SKM3_ROSCH; Putative transcription factor GRAS family
STRING	XP_004307492.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	9e-61	GRAS family protein

Link Out ? help Back to Top
Phytozome	mrna26491.1-v1.0-hybrid