PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MIKC_MADS

Protein Properties

Length: 210aa MW: 24113.1 Da PI: 9.3984

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna26118.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	67.1	1.8e-21	9	42	1	34
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae mrna26118.1-v1.0-hybrid 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE 42 79******************************98 PP
2	K-box	100.9	1.8e-33	41	127	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ae+++qe+ +Lk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk+iRs+K++++l+++++lq++e++l e+nk+Lr+kle mrna26118.1-v1.0-hybrid 41 AENSYQEYLRLKARVEVLQRSQRNLLGEDLGPLNTKELEQLEHQLESSLKHIRSTKTQFMLDELSDLQNREQMLVETNKSLRRKLE 126 5899********************************************************************************98 PP K-box 100 e 100 e mrna26118.1-v1.0-hybrid 127 E 127 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.02	1	42	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-22	1	51	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.36E-20	1	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-17	10	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.4E-19	23	38	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	16.07	41	131	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.0E-28	41	125	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AENSYQEYLR LKARVEVLQR 60 SQRNLLGEDL GPLNTKELEQ LEHQLESSLK HIRSTKTQFM LDELSDLQNR EQMLVETNKS 120 LRRKLEETNL QGAPLHLAWD GGYGQNNIHE HNSRFPPQSQ GFFQQLQGNN NSAMQMGYTP 180 LGSDHHHHQQ MNAGNPGQNV NGFIPGWML*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ox0_A	6e-33	43	125	19	101	Developmental protein SEPALLATA 3
4ox0_B	6e-33	43	125	19	101	Developmental protein SEPALLATA 3
4ox0_C	6e-33	43	125	19	101	Developmental protein SEPALLATA 3
4ox0_D	6e-33	43	125	19	101	Developmental protein SEPALLATA 3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna26118.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299281.1	1e-145	PREDICTED: MADS-box protein CMB1-like
Swissprot	Q8LLR2	2e-83	MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBL	A0A2P6P359	1e-131	A0A2P6P359_ROSCH; Putative transcription factor MADS-MIKC family
STRING	XP_004299281.1	1e-144	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF229	32	178

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-54	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	mrna26118.1-v1.0-hybrid

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]