PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna26101.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 377aa    MW: 41441.1 Da    PI: 9.0287
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna26101.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.38.4e-2860170389
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaess 78 
                              g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl+     i +l+ +          ++s+a        
  mrna26101.1-v1.0-hybrid  60 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEVTDDDIEKLPPLqllphhgllnTTSTA-------- 137
                              78*************************************************************544444444322222........ PP

                      TCP  79 sssasnsssg......................k 89 
                              + + ++++++                      +
  mrna26101.1-v1.0-hybrid 138 HHQFHHQQQQilnpvnvpffdvnrrlteqvvlD 170
                              111111111123344455555555555555442 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-2661140IPR005333Transcription factor, TCP
PROSITE profilePS5136926.83961119IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMTDPRGKGF QAKQEGQNNN NNDGNTMSSY NKAASSSTTT SRQWSGFRNP RIVRVSRTFG  60
GKDRHSKVST VRGLRDRRIR LSVPTAIQLY DLQDRLGLSQ PSKVIDWLLE VTDDDIEKLP  120
PLQLLPHHGL LNTTSTAHHQ FHHQQQQILN PVNVPFFDVN RRLTEQVVLD ESKGKSIKDH  180
DDQALAQKLF PIGNMPSSIP GLLNNAMAYN NYFQNHNSEP SCLSLSQFGS SSHGFPLAPQ  240
MDHMMSSNNG LSFSNTSMPM ASGSQLFFCP STATPVPSLF GPYAPYITAT TPVGENSSTS  300
NDQQPALRQT SNHMIQLLSS GNTTSQNFAP NNVLMPSLQY SIGSSLRSFP TLDNLKLHSQ  360
NHNASSSQPN KDDTGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1866120155Putative transcription factor PCF6
5zkt_B1e-1866120155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna26101.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301109.20.0PREDICTED: transcription factor TCP5
RefseqXP_011464305.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A2P6P3330.0A0A2P6P333_ROSCH; Putative transcription factor TCP family
STRINGXP_004301109.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5