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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25942.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 327aa MW: 36838.5 Da PI: 4.4901 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.1 | 7.4e-19 | 91 | 144 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k mrna25942.1-v1.0-hybrid 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 144 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.3 | 3.2e-41 | 91 | 180 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kkrrl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+++L mrna25942.1-v1.0-hybrid 91 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYNSLKADCDSLCKENDKL 176 9************************************************************************************* PP HD-ZIP_I/II 88 reel 91 ++e+ mrna25942.1-v1.0-hybrid 177 KAEV 180 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 78 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.633 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-18 | 88 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.77E-17 | 89 | 147 | No hit | No description |
Pfam | PF00046 | 3.0E-16 | 91 | 144 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-20 | 93 | 154 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 8.8E-16 | 146 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MAGGGRVYNS SGGASFLLRN QRGSSASEPL DSLFLSGSSN ASSTSPFLGS SMVSFEDVRG 60 GNGLKRSMFH QYEHEDNCDE EFDDYFHQPG KKRRLTADQV QFLEKSFDLE NKLEPERKIL 120 LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQANYN SLKADCDSLC KENDKLKAEV 180 LLLSERLQLK DKERANSEQS DTNKSHQEPQ QMPIAESVSS EGEVSKLSVV ACKEDLSSVK 240 SDIFDSDSPH YTDGVHSSLL ERGDSSYIFE PDQSDLSQDE EDNLSKSLLP TYIFPKLEDV 300 DYTDPPANSC NFGFPVEDQA FWSWSY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARWKTKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25942.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299399.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A2P6P2E7 | 0.0 | A0A2P6P2E7_ROSCH; Putative transcription factor Homobox-WOX family | ||||
STRING | XP_004299399.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-45 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna25942.1-v1.0-hybrid |