PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna25669.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25400.8 Da PI: 9.0107 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.7 | 9.4e-21 | 10 | 60 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ s rqvtfskRrng++ KA+ Sv daevavi+fs+tgkly +ss mrna25669.1-v1.0-hybrid 10 KKIEDLSARQVTFSKRRNGLFRKAKRWSVSYDAEVAVIVFSNTGKLYQFSS 60 68***********************************************96 PP | |||||||
2 | K-box | 45.8 | 2.5e-16 | 95 | 164 | 20 | 89 |
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 L+++i +L++ ++ G +L+ LslkeL +Le++L++++ +i ++K+e+lle ++ ke+++ e mrna25669.1-v1.0-hybrid 95 ATVLLQEQIASLKSDCSRMRGRELDGLSLKELDELEKELNQGILSITKRKDEVLLEDFYSSKSKEEQIME 164 445699***********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-22 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.436 | 5 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-23 | 5 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-20 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-18 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.116 | 89 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.3E-10 | 98 | 164 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MGPPRRTEIK KIEDLSARQV TFSKRRNGLF RKAKRWSVSY DAEVAVIVFS NTGKLYQFSS 60 TSMEHTLLRY NNKGVSSPDE KRQHEAAAKP ETLNATVLLQ EQIASLKSDC SRMRGRELDG 120 LSLKELDELE KELNQGILSI TKRKDEVLLE DFYSSKSKEE QIMEILSANN YRKPSSVLEL 180 FSDSLLPLDR SRLFYASSSN DIASCSESAG SGKHKDLSLQ LSLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 5 | 91 | 4 | 92 | MEF2C |
5f28_B | 1e-14 | 5 | 91 | 4 | 92 | MEF2C |
5f28_C | 1e-14 | 5 | 91 | 4 | 92 | MEF2C |
5f28_D | 1e-14 | 5 | 91 | 4 | 92 | MEF2C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 34 | KRRNGLFRKAKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna25669.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301484.1 | 1e-163 | PREDICTED: agamous-like MADS-box protein AGL18 | ||||
STRING | XP_004301484.1 | 1e-162 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57390.1 | 1e-27 | AGAMOUS-like 18 |
Link Out ? help Back to Top | |
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Phytozome | mrna25669.1-v1.0-hybrid |