PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25646.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 962aa    MW: 105505 Da    PI: 6.9712
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25646.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-181472357
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  mrna25646.1-v1.0-hybrid 14 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 72
                             5679*****************************************************97 PP
2START165.83e-521583662205
                              HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECT CS
                    START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetleviss 87 
                              +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++ +++l+v+ +
  mrna25646.1-v1.0-hybrid 158 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRTVDVLNVLPT 242
                              7899******************************************************.**************************9 PP

                              T..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
                    START  88 g..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167
                              +  g+++l +++l+a+++l+p  df+++Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v
  mrna25646.1-v1.0-hybrid 243 AngGTIELLYMQLYAPTTLAPaCDFWMLRYTSVLEDGSLVVCVRSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIV 328
                              999*************************************************9988899*************************** PP

                              E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                    START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                              +h+dl+   ++++lr+l++s+++ ++k+++a+l+++++
  mrna25646.1-v1.0-hybrid 329 DHMDLEPCGVPEVLRPLYESSAVLAQKMTMAALRQLRQ 366
                              **********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.483973IPR001356Homeobox domain
SMARTSM003891.2E-151177IPR001356Homeobox domain
CDDcd000861.15E-161474No hitNo description
SuperFamilySSF466896.84E-171477IPR009057Homeodomain-like
PfamPF000463.5E-161572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-181672IPR009057Homeodomain-like
CDDcd146861.36E-666105No hitNo description
PROSITE profilePS5084822.472148376IPR002913START domain
CDDcd088751.37E-74152368No hitNo description
SMARTSM002346.0E-40157367IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-19157363IPR023393START-like domain
SuperFamilySSF559611.92E-35157368No hitNo description
PfamPF018527.6E-50158366IPR002913START domain
PfamPF086701.5E-46693830IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    Send to blast
MSCKDGKGVM DNGKYVRYTP EQVEALERLY HECPKPSSIR RQQLIRECPI LSNIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENDRL QKQVSHLVYE NGYFRQHTQT  120
TTLATKDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPTRVAEI LKDLPSWLRD CRTVDVLNVL  240
PTANGGTIEL LYMQLYAPTT LAPACDFWML RYTSVLEDGS LVVCVRSLKN TQNGPSMPPV  300
QHFVRAEMLP SGYLIRPCEG GGSIIHIVDH MDLEPCGVPE VLRPLYESSA VLAQKMTMAA  360
LRQLRQIAHE VSQSSVTGWG RRPAALRALS QRLSRGFNEA LNGFTDEGWS LMGNDGMDDV  420
TILINSSPDK LMGLNLSFGN GFPAVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN  480
NIDAYSAAAV KVGPCSLAGS RVGSFGGQVI LPLAHTIEHE EFLEVIKLEG IGHSPDDPMM  540
QTREMFLLQL CSGMDETAVG SCAELIFAPI DASFADDAPL LPSGFRIIPL DSGKEASSPN  600
RTLDLASALE IGPTGNRASS EYSANAGCVR SVMTIAFEFA CESHMQEHVA SMARQYVRSI  660
ISSVQRVALA LSPSHLSSHA GLRSPLGTPE AQTLARWICN SYRGYLGVEL LKSCNEGSES  720
NLKSLWHHSD AIMCCSLKAV PVFTFANQAG LDMLETTLVA LQDIALEKIF DDHGRKTLFS  780
EFPQIMQQGF ACLQGGICLS SMGRPVSYER AVAWKVLNEE ETANCICFFI FMGSLFSQVW  840
GLRMCLVFLD NSKSLFSHVK VSGQAAEGNV PGRVQRVSHL ALVRLRRCWP MAKPECEECG  900
RTGNQVIGAI GDGWVGCHRW LDSDLLSVIR VSLLRLSTPH YLTAAGGDGD IIVSKHKWRV  960
W*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25646.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0005530.0KJ000553.1 Prunus persica homeobox protein 15 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302866.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A2P6RXA70.0A0A2P6RXA7_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004302866.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]