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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | mrna25618.1-v1.0-hybrid | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 214aa MW: 24093.2 Da PI: 11.5672 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 89.8 | 1.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s
mrna25618.1-v1.0-hybrid 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 59
8***********************************************86 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.959 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.66E-28 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.91E-38 | 2 | 60 | No hit | No description |
| PRINTS | PR00404 | 5.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 214 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGRLYDYAST 60 RQFYPHHFNM YKERESGSEK TLPVSRWSPV TGRRLPDSGP RIFSDRHRNL VGFSPVTGHS 120 PSHKKFITPS NKNSSTPPRP PPAVGATKLR LLNDEAAKEI ESNQRTRILR RRSASFDDEV 180 LKDRRARGQG NQGEAGGGEG DRRHQWRSIG RDL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 6e-20 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_B | 6e-20 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_C | 6e-20 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_D | 6e-20 | 1 | 60 | 1 | 60 | MEF2C |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | mrna25618.1-v1.0-hybrid |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF119 | 33 | 360 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G14210.1 | 3e-34 | AGAMOUS-like 44 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | mrna25618.1-v1.0-hybrid |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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