PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25304.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 358aa    MW: 37511.6 Da    PI: 4.4609
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25304.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07269291123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ Cgk+F+++ +L++Hi  H
  mrna25304.1-v1.0-hybrid 269 YPCTVCGKTFPNPRSLTSHIGFH 291
                              99*****************9666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.67E-5267294No hitNo description
PROSITE profilePS5015711.261269296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-4269291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001269291IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGDKEHEKQR DPSPPKNPHD EDKDEDNDDD GGDKKTKNLL RYLEKKPMQG NPLSKKEKSS  60
SASGSVFGDK RNRDPDVDQD MGLGGSGAKY VGAKSNLWGD NYVYGSVASS GSGESLFGAE  120
DLLSNVGKNA MQKEQGNPSS KKEKSSSASR SIPGDKRNRD SVQDDENGDG SRVTKNMSSV  180
WGAPDQFMRL GGSDAKYDAK SSLGSTASGM SSVAVGGFGS GEGDASLYGA FKSNAGVKIV  240
GSGCGAKDGV MSNVSGQVGG ASWSVSEIYP CTVCGKTFPN PRSLTSHIGF HARQGTMVED  300
DSIIKSMEAL IGMGSLPSNV ESIQATWSEE PFLEDTGEAL PEDNGGEDNE AGEDDEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25304.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3427422