PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25213.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 293aa    MW: 31919.3 Da    PI: 8.4159
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25213.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055226248223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp Cg  Fs+  +L  H ++ H
  mrna25213.1-v1.0-hybrid 226 ECPQCGAKFSSVTTLIDHVQKvH 248
                              5******************9988 PP
2zf-C2H215.83.9e-05265286323
                              ETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                              Cp+C+k F+++  L+ H  + H
  mrna25213.1-v1.0-hybrid 265 CPKCSKGFRDPVALVEHVEKeH 286
                              *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.8E-12458No hitNo description
PROSITE profilePS510397.8891056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.0E-101153IPR000058Zinc finger, AN1-type
PfamPF014283.4E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.5E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.4E-1191149IPR000058Zinc finger, AN1-type
SuperFamilySSF1183109.42E-993144No hitNo description
PROSITE profilePS510397.91898151IPR000058Zinc finger, AN1-type
PfamPF014282.3E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.022101142IPR000058Zinc finger, AN1-type
SMARTSM003550.014225248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473225248IPR007087Zinc finger, C2H2
PfamPF138942.5E-4226248No hitNo description
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM003555.4263286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912263291IPR007087Zinc finger, C2H2
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVVECQQ IDFLPFTCDS CYKVFCLEHR SYIKHNCPKG DRQNVTVVIC  60
PLCAKGVHLI PDEDANITWE RHVNTDCDPS NYEKATKKKK CPVPGCREVL TFSNTIKCRD  120
CMADHCLKHR FGPDHKCPGP KKVEAGFPFM GLLNRSRTET PKRNHAPATS SPNWGSSFLS  180
AASSFKASAS AGVAKLTNEL GQKWQTTKDG VGQSSSEGSR SGQVEECPQC GAKFSSVTTL  240
IDHVQKVHEK GGVRAGVKKL TVDACPKCSK GFRDPVALVE HVEKEHGGTS RA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25213.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304391.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-127SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLM5VQL81e-180M5VQL8_PRUPE; Uncharacterized protein
STRINGXP_004304391.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein