PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna25123.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 677aa    MW: 75073 Da    PI: 6.5713
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna25123.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23131231198
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+kvlt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD+
  mrna25123.1-v1.0-hybrid 131 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDS 214
                              99****************************9543..445569******************************************** PP

                              EEEEE-SSSEE..EEEEE- CS
                       B3  80 vvFkldgrsefelvvkvfr 98 
                              +vF +   +++ l+v+++r
  mrna25123.1-v1.0-hybrid 215 FVFLR--GDNGDLRVGIRR 231
                              ****3..377888***998 PP
2Auxin_resp106.62.9e-35257336183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++t++ F v+Y+Pr+  s+F+v+++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d++p +W +SkWrsLk
  mrna25123.1-v1.0-hybrid 257 ASHAVATQTLFVVYYKPRT--SQFIVSLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISP-QWADSKWRSLK 336
                              789***************6..9***********************************************99.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-40120260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-41125246IPR015300DNA-binding pseudobarrel domain
CDDcd100172.22E-20130231No hitNo description
SMARTSM010197.6E-23131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.167131233IPR003340B3 DNA binding domain
PfamPF023626.3E-22131231IPR003340B3 DNA binding domain
PfamPF065076.2E-33257336IPR010525Auxin response factor
PfamPF023092.4E-8548603IPR033389AUX/IAA domain
SuperFamilySSF542779.51E-14561643No hitNo description
PROSITE profilePS5174524.683567648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAHQAGSYSQ PNIFDKGADV LYPELWKACA GPLVEVPRLK ERVFYFPQGH MEQLEASTTT  60
NPEANQVIPR FNLPSKILCQ VMHVQLLAEQ DTDEVYAQIT LIPEANQFKE PTSPDPDECL  120
SEPERPKVYS FCKVLTASDT STHGGFSVLR KHATECLPPL DMTQATPTQE LVAKDLHGYE  180
WRFKHIFRGQ PRRHLLTTGW STFVTSKRLS AGDSFVFLRG DNGDLRVGIR RLARQQSSMP  240
SSVISSQSMH VGVLATASHA VATQTLFVVY YKPRTSQFIV SLNKYLEAVN NKFSVGMRFK  300
MRFEGEDAPE RRFSGTIIGL EDISPQWADS KWRSLKVQWD ESASIPRPDR VSPWEIEPYV  360
ASIPASLSQS TVLKNKRPRL VPEIPAPDTA SSITWHDVTQ LSGAAEGQRS EDHVALNHQQ  420
ADIISISSCI SRTTDGGWLS SPTVEDSKTG PAWPLFSGYS TPTSLKPKND LMLDHVEKRK  480
KTETASGCLI FGVDFSSNPK SAHSVEKPPP QPIIASTGTT EGQVSISVEA ESDQKSDLSK  540
ASKESKAQLQ VSPKETLSKQ SSSASTRSRV KVQMQGIAVG RAVDLTMLEG YEQLIVELEE  600
MFDIKGQIGP RKKWEIVFTD DEGDMMLAGD DPWLEFCNMV RRIFICSSQD VKKISAGRKR  660
LSMSSLEVEG TVTSLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1691835816354Auxin response factor 1
4ldw_A1e-1691835816354Auxin response factor 1
4ldw_B1e-1691835816354Auxin response factor 1
4ldx_A1e-1691835816354Auxin response factor 1
4ldx_B1e-1691835816354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna25123.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300502.10.0PREDICTED: auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P6P3W50.0A0A2P6P3W5_ROSCH; Auxin response factor
STRINGXP_004300502.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9