PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24978.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 469aa    MW: 52640.8 Da    PI: 8.545
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24978.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-181353343
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                             i+n++ r+vtf kR++g+lKKA+EL +LCd++ +vii+ s+
  mrna24978.1-v1.0-hybrid 13 IQNERSRKVTFRKRKTGLLKKAYELNTLCDVKGCVIIYESN 53
                             89***********************************9764 PP
2K-box15.57e-07931471168
                    K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                              ++k e+lq++++kL++++++Lq        + ++ Lsl +L +L q+L++ ++ +R  
  mrna24978.1-v1.0-hybrid  93 AEKIEQLQTKIKKLRRKNDELQFP---TCDDRMNALSLDQLLSLAQKLDHKIEAVRRS 147
                              678999****************65...57899***********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-11162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.946354IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-9525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-18786IPR002100Transcription factor, MADS-box
CDDcd001207.49E-171250No hitNo description
PfamPF003192.6E-181353IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-94061IPR002100Transcription factor, MADS-box
SuperFamilySSF502497.71E-38335465IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1401.8E-43343464IPR012340Nucleic acid-binding, OB-fold
CDDcd044911.09E-18358441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVRSNSRLSW DLIQNERSRK VTFRKRKTGL LKKAYELNTL CDVKGCVIIY ESNSDGQLLQ  60
PEIYPKQEEV KQIINKYASC SSKRVHNLED FYAEKIEQLQ TKIKKLRRKN DELQFPTCDD  120
RMNALSLDQL LSLAQKLDHK IEAVRRSMQC AINHEGRLGP MPLYHNGRAL PEEQSSAQAQ  180
GLFYDNLDHQ MLAFDSRMLA FEHQSNNGWN HSAGMTPLAE YAPLTLTLPP NCHDVTFHNH  240
APPYPMSTSA LFPPHFVSSD KLPLSLGSAQ QPSLENTNVS SSQSPEDLRR LEDKGWINNS  300
SGVNLTTFHG FWNCEAMSST TTNKAGTASA QQSNAKPGLR KPVFVKVSDL KPGTSGHTLV  360
VKVINATTVL QKGRSVSQHL RQSRISECLI GDETGTILFT ARNEQVDLMK PDSTVIIRNA  420
KIDMFKGSMR LAVDKWGRIE VTEPAKFVVK DNNNLSLVEY ELVSVVEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wjj_A9e-5334046112139hypothetical protein F20O9.120
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KLRRKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24978.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292021.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
STRINGXP_004292021.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2623022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.12e-16AGAMOUS-like 92