PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna24912.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 135aa MW: 15420 Da PI: 4.3225 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.4 | 5.9e-06 | 83 | 103 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C+ Cg+++ + L++H+++ mrna24912.1-v1.0-hybrid 83 VCNFCGRRYETAAALEKHQKK 103 7******************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 135 aa Download sequence Send to blast |
MASLAGGEWR RSGGGDFLVE EAVNEDDEVV EEVEDEDDDE LVEEVVNEDD ETVEEEVEDE 60 DDDELVEEEA KKKKKKKKKD GVVCNFCGRR YETAAALEKH QKKYRMSYYK ICGKCKNKLL 120 CKGDYEVHRR GCKG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 70 | 78 | KKKKKKKKK |
2 | 72 | 78 | KKKKKKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna24912.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34476 | 2 | 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna24912.1-v1.0-hybrid |