PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24887.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 496aa    MW: 54192.2 Da    PI: 5.943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24887.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.61.4e-1558111457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++++ q+  Le +F+k++++  +++ +LA +lg++ rqV vW+qNrRa+ kk
  mrna24887.1-v1.0-hybrid  58 KRKLNEAQVSLLELHFRKEQKLESKKKDQLAFELGINPRQVAVWYQNRRARSKK 111
                              467899**********************************************97 PP
2HD-ZIP_I/II101.57.3e-3357148293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+l++ qv+lLE +F++e+kLe+++K +la eLg++prqvavW+qnrRAR k+kqlE++y++Lk+a+++++ ++ +Le+ev++L
  mrna24887.1-v1.0-hybrid  57 NKRKLNEAQVSLLELHFRKEQKLESKKKDQLAFELGINPRQVAVWYQNRRARSKKKQLEEEYSSLKKAHETVVVQKLKLESEVQKL 142
                              79************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l+e
  mrna24887.1-v1.0-hybrid 143 KERLSE 148
                              *99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.49952112IPR001356Homeobox domain
SMARTSM003891.4E-1255116IPR001356Homeobox domain
CDDcd000867.91E-1258113No hitNo description
PfamPF000468.0E-1358111IPR001356Homeobox domain
SuperFamilySSF466894.71E-1558121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-1559120IPR009057Homeodomain-like
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MKNTTINHQD DHMLLMITHQ FYPDVYTQNV QPQVAATKPR RRRNKGKSVE AGSAGANKRK  60
LNEAQVSLLE LHFRKEQKLE SKKKDQLAFE LGINPRQVAV WYQNRRARSK KKQLEEEYSS  120
LKKAHETVVV QKLKLESEVQ KLKERLSEAE EKIHRLSERV EGSGSSNTPS SSLSKDANIG  180
PPLLGEFRVE EYDDVFYMLQ NNFIDDLDWM NLKINVINIV TLAPSILGSL GLQVLNTDNT  240
LLPYFMTIHE NSMETEIPFS RKYIEDSALE GVAEIGIHQM NRVFPRKEPS CLKKLVEVLG  300
LKTGITDGIY LKENNVINDV IVVGLAVDAS ACRMDAVVEV VAEIAEVVAV VVEAAAVLAT  360
EAALVLEIAA VVAKEVVAVV AKELVAVLVE IAAVVGKEVA AVASEHNIVE VAAVDTVVIT  420
TAAAAADAAA AADAAAVVAE GIAVAGSNNI ATSDNRYSAL RTAHCLILMT EASVEQQVGQ  480
AMGAEMKRHH WRLVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARSKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24887.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.17e-58homeobox protein 40