PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24852.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28717.3 Da PI: 9.6487 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.4e-31 | 27 | 77 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyeys+ mrna24852.1-v1.0-hybrid 27 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYSN 77 79***********************************************95 PP | |||||||
2 | K-box | 97.8 | 1.6e-32 | 94 | 188 | 3 | 97 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +s++ s++ea+a+++qqe+akL+++i+ Lq+++R ++ e+L+++++keL+ +e++Lek++++iRskKnell+++ie++qk+e +l+ mrna24852.1-v1.0-hybrid 94 TSTNGSASEATAQYYQQEAAKLRNQINALQNSNRGYMAEGLSNMNIKELKGMESKLEKAITRIRSKKNELLFAEIEYMQKRELDLH 179 45566699****************************************************************************** PP K-box 89 eenkaLrkk 97 ++n+ Lr+k mrna24852.1-v1.0-hybrid 180 NNNQLLRAK 188 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.2E-41 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.571 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.75E-45 | 20 | 93 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-33 | 20 | 92 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-33 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-33 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.0E-33 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-25 | 102 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.126 | 105 | 197 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007027 | developmental stage | whole plant fruit formation stage 70% to final size |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAYENKPNTD LDADAQRRLG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSNRG RLYEYSNNSV RETIERYKKA CADTSTNGSA SEATAQYYQQ EAAKLRNQIN 120 ALQNSNRGYM AEGLSNMNIK ELKGMESKLE KAITRIRSKK NELLFAEIEY MQKRELDLHN 180 NNQLLRAKGQ IAENERQQQS INAIAGGHGS YEIVQPTQPF HEARNYFQVN ALQPNIHQYS 240 RHDQVSLQLV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-19 | 19 | 87 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24852.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF168468 | 0.0 | AF168468.1 Fragaria x ananassa agamous protein (Stag1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011460371.1 | 0.0 | PREDICTED: floral homeotic protein AGAMOUS isoform X2 | ||||
Swissprot | Q40872 | 1e-114 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | Q9MBD9 | 1e-172 | Q9MBD9_ROSRU; MADS-box protein | ||||
STRING | XP_004293646.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-105 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna24852.1-v1.0-hybrid |