PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24494.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30268.4 Da    PI: 10.057
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24494.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-312978150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                             krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  mrna24494.1-v1.0-hybrid 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 78
                             79***********************************************8 PP
2K-box114.21.3e-37961924100
                    K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                              s++ s++ea+ + +qqe++kL+++i+++q+++Rh+lGe L++L++keL++Le +Lek++++iRskKne+l+++ie++qk+e elq+
  mrna24494.1-v1.0-hybrid  96 SNTGSVTEANVQFYQQEASKLRRQIREIQNSNRHILGEALSTLNVKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIELQN 181
                              334449******************************************************************************** PP

                    K-box  90 enkaLrkklee 100
                              +n+ Lr+k++e
  mrna24494.1-v1.0-hybrid 182 HNNFLRAKIAE 192
                              ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.5012181IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-402180IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-3322108IPR002100Transcription factor, MADS-box
CDDcd002651.42E-442296No hitNo description
PRINTSPR004049.6E-332343IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PfamPF003192.2E-263077IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-334358IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-335879IPR002100Transcription factor, MADS-box
PfamPF014861.6E-27104190IPR002487Transcription factor, K-box
PROSITE profilePS5129715.125106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEIPKQITPA DDPESSSQKK LGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALIVFST RGRLYEYANN SVRATIERYK KACDSSNTGS VTEANVQFYQ QEASKLRRQI  120
REIQNSNRHI LGEALSTLNV KELKNLEGRL EKGISRIRSK KNEMLFAEIE YMQKREIELQ  180
NHNNFLRAKI AENDRAQQQQ ANMLPGTSSA YEQPMPPPQS YDRSFLPVII ESNHNYNRQG  240
QNLTPLQLVF DTRLWASFRL SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-202189169Myocyte-specific enhancer factor 2B
1tqe_Q7e-202189169Myocyte-specific enhancer factor 2B
1tqe_R7e-202189169Myocyte-specific enhancer factor 2B
1tqe_S7e-202189169Myocyte-specific enhancer factor 2B
5f28_A7e-202189169MEF2C
5f28_B7e-202189169MEF2C
5f28_C7e-202189169MEF2C
5f28_D7e-202189169MEF2C
6c9l_A7e-202189169Myocyte-specific enhancer factor 2B
6c9l_B7e-202189169Myocyte-specific enhancer factor 2B
6c9l_C7e-202189169Myocyte-specific enhancer factor 2B
6c9l_D7e-202189169Myocyte-specific enhancer factor 2B
6c9l_E7e-202189169Myocyte-specific enhancer factor 2B
6c9l_F7e-202189169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24494.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6767870.0KC676787.1 Fragaria x ananassa SHATTERPROOF-like protein (SHP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309724.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X1
RefseqXP_011471013.10.0PREDICTED: floral homeotic protein AGAMOUS isoform X2
SwissprotQ93XH41e-122MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A2P6S0261e-178A0A2P6S026_ROSCH; Putative transcription factor MADS-MIKC family
TrEMBLT2AAD61e-178T2AAD6_FRAAN; SHATTERPROOF-like protein
STRINGXP_004309724.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-117MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]