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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24052.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 2321aa MW: 263506 Da PI: 7.8729 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1.1e-17 | 1956 | 2046 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l++s+v + ++ lp f+++h + +++t+tlede gr+ + k+i +k++ l++GW++F+ +++L egD++vF+l mrna24052.1-v1.0-hybrid 1956 FVKSLLRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDEGGRQLQSKYIACKTG----LSAGWRQFAASHKLLEGDVLVFQL 2033 89************************644..678****************777776....***********************9 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ +f +v v+r+ mrna24052.1-v1.0-hybrid 2034 VEPAKF--KVYVIRS 2046 875555..8888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 8.24E-9 | 320 | 363 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 1.8E-10 | 321 | 362 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF00646 | 9.2E-5 | 322 | 356 | IPR001810 | F-box domain |
SMART | SM00256 | 0.012 | 326 | 366 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 1.8E-10 | 433 | 615 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 7.06E-6 | 469 | 621 | No hit | No description |
Pfam | PF08387 | 2.4E-4 | 633 | 670 | IPR006566 | FBD domain |
SuperFamily | SSF81383 | 3.27E-10 | 836 | 886 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 8.703 | 836 | 872 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 1.5E-14 | 836 | 872 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF00646 | 1.8E-4 | 838 | 873 | IPR001810 | F-box domain |
SMART | SM00256 | 0.037 | 842 | 882 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 1.5E-14 | 943 | 1169 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 2.75E-11 | 972 | 1182 | No hit | No description |
Pfam | PF08387 | 1.2E-5 | 1349 | 1387 | IPR006566 | FBD domain |
SuperFamily | SSF81383 | 2.75E-8 | 1428 | 1466 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 2.3E-11 | 1428 | 1469 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Pfam | PF00646 | 0.0012 | 1431 | 1463 | IPR001810 | F-box domain |
SMART | SM00256 | 0.013 | 1433 | 1472 | IPR001810 | F-box domain |
Gene3D | G3DSA:3.80.10.10 | 2.3E-11 | 1522 | 1750 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 1.1E-6 | 1579 | 1751 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-19 | 1948 | 2047 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.83E-22 | 1949 | 2047 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-23 | 1954 | 2045 | No hit | No description |
SMART | SM01019 | 2.0E-20 | 1956 | 2047 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.435 | 1956 | 2047 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-15 | 1956 | 2046 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2321 aa Download sequence Send to blast |
MSKTAAKFFP SYSDPPSATF KILHSDYCRC RVIGSSLFVL PTSSTEPTNS LGLFNSAFAT 60 SMASNELEAQ LLEIGNQLLE PPSTVEELLP LLDRIERCLT KVGQSPNKSM QAALSPSQKA 120 LVAEQLLRHS DPHVKVSVAS CITEITRITA PDAPYDDDPM KEAFQLIVST FENLQNKPSR 180 SYTKTTYILE TVARVRSCDL MLDLECDELI VEMFQHFLKA IRGYHPVSVI SSMENIITLV 240 IEECEDVSCQ LLAPLLASVK NVEEEVETHG IALADYSKVV ASICSESAGD TEKNGVHDDK 300 DMGGYNLRGR KKKDVDLNMF DRISGLPDEI LTSILSLLPL REAQATRILS RRWQHVWPYC 360 TTLNFNAGRQ LITFGKLQFD WERELVLRMY VDWVDSVLKQ HKAPNIERFR VAFGHGPRSC 420 IDDWIQFAMR KGVQILEMDL SAILHPRGLH YKLSNKVLGI REFSSFKALC SEYIGFKFLK 480 VLDFNCVDVD QGILEYFIYN CPVLERVAVC DSSLLVNLRV VGQSIALKYL TIHRCRNLKS 540 VEICEANLVS FTYGGELEKL LLRNLPLLVE WAETDSLPNL KCLELAFDEA NNCALLDVAF 600 FIKQTPCLHT LVMKFRSRWS PKSPFSKKRP KRCSFDSLKV VKFVEYSGLS RQIELVKYLM 660 KTASNIEKII FDPVNRQYSG NGYWNMGKLN SVLDHETVNV IKGIPLPTIV ASDEFVWRPA 720 ADGRFSIRSA TWLQWFYTFD ELFLSQFRKG HDKFVAEDCI ISSMLRRIKN TIQKSQWVEI 780 STMEEVTPIL MSQWHPPQKT SPNSILMRLD AFNLDSLNGG YHMKERKKKD VAGNMEDRIS 840 GLPDEILVSI LSLLSLKEAQ ATSILSRRWH YVWAFSTTLN FDAEQRLIRF CKPKSDRERE 900 LGLCMYVDWV DSVLNQHRVA NIERFRIAFE LGPRSCIDKW IQFAMRKGVQ ILELDLSAIL 960 YPWGLQYKFS NQVLGISEFS SFKALCSEYI GFKFLKVLDF NRVDVDQDIL EYFIYNCPVL 1020 ERVAVCDSSL MVNLRVVGQS IALKYLTIQQ CLNLKSIEIC EANLISFTYG GDLEKLLLRN 1080 LPLLVEISLS GMTRITGWSA KIDFSYLSCC LSQLEILKIN YIILWGETDP VIPSLPNLKC 1140 LELAFDEDNN YALLHIAFFI KQTPCLHTLV MKFRSWRCPK NPFAKKRAAR YSHDCLKVVK 1200 FLEYSGLSRQ IELVKYLMKT ASNLEKIIFD PVNRQYSGVH RLLFPHIVEM EELSRAEAHQ 1260 LKEKLPATLD VVCHAPPPLE DSSSVVDHFL SPASPFFSSF PVLGDLTGEG KWLGTLLESS 1320 GVEARRHRRR RFRSWRCQKS PFAKKRAARC SHDCLKVVKL VGYCGLSRHI ELVKYLMKTA 1380 STLEKIILDP VDRQCSEGDS AAGSWFFSTH FRFTMVESDI KDFGSMVDRT SGLPDEILVS 1440 ILSLLSLKEA QATSILSRRW QYVWAYCITL NFAEKILVRF RELDREAREL ERCRYVNWVD 1500 SVLKQHRAVN IELFRVAFNR GPRSSIDEWI QLAMRKGVQM LELDFSAHAP LLDEKYRFSG 1560 KLFGIGETSG LESSCSEYIG FKCLKVLDLK SVEVDQVVPE YFISNCPVLE RLAVYKSYSL 1620 VNLRVVGQSI ALKYLVIQKC FGIESIEISD ANLVSFIYEG GLENLLLRNL PLLVEISLLE 1680 GLICYDLKIA SRSLSCCLSQ LEILKLKDPV IPKLPNLKRL ELEFDDNDNY ALLHLASFIK 1740 ESPCLHTLVL KEELSRAQAR QLKKKLTATV EVVCLKRLNE VWPKECMAKA TSQQLGSPLT 1800 GGGKQGGARV GGKGLQIPFS SESPPLVSSE EHNLMGPNIR KGTPQRTEKK ENKPKTPPSK 1860 PKPKPTTKRV PTPPGNQKKT NKLNEKEVEH SLPMKELSNT QMLEQAALGH SGKSTPSSTQ 1920 YDILIEGSPS RGQAKSSAII RAQEVRSKLD PTFPSFVKSL LRSHVASCFW MGLPSLFCKS 1980 HLPDKDITMT LEDEGGRQLQ SKYIACKTGL SAGWRQFAAS HKLLEGDVLV FQLVEPAKFK 2040 VYVIRSNDFT EVDGALGLLN LDAQTKHNDA GMFLNSYKDN AEPGAVACNE SNRKRTKSPP 2100 EVVQKKKKID LPVEYSEIDS EETDSEVVEN SRLPGTTLQF EDIKSYENFN ILVNGLLVDS 2160 EFPEDIRIKY YKLCCSQNAF LHENVMKGTD YKLIVGAIVE TVHIVDAIKA CQITTTQDDF 2220 VCWDRYLRAF ELLGMNVGFI RVRLCRLANL AFDSEDAMDA KTYKEARKER ARAGLGLRNI 2280 ETKIQELREA CHDFSSAIES LRSKAEVYNH RFQEEVTAPW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5frp_A | 6e-14 | 76 | 252 | 28 | 192 | SISTER CHROMATID COHESION PROTEIN PDS5 |
5frp_B | 6e-14 | 76 | 252 | 28 | 192 | SISTER CHROMATID COHESION PROTEIN PDS5 |
5frr_A | 6e-14 | 76 | 252 | 28 | 192 | SISTER CHROMATID COHESION PROTEIN PDS5 |
5frr_B | 6e-14 | 76 | 252 | 28 | 192 | SISTER CHROMATID COHESION PROTEIN PDS5 |
5frs_A | 6e-14 | 76 | 252 | 28 | 192 | SISTER CHROMATID COHESION PROTEIN PDS5 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2092 | 2107 | RKRTKSPPEVVQKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24052.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna24052.1-v1.0-hybrid |