PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22963.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 769aa    MW: 83369.5 Da    PI: 6.5117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22963.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16442488455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  mrna22963.1-v1.0-hybrid 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 488
                              6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.5E-20435496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-20435501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.21E-17441492No hitNo description
PfamPF000101.2E-13442488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MPLSELLSRG RSDSNQDFEP LSDLVELVWE NGQIMMQSQS NRARKSPTFN SLPSHTPRNR  60
DRDLGNGSNG KMGKFGSVNS VIDEIPLSVP SGEMGLSDDD DMLPWLNYAL DQPLQHEYSH  120
DFMPEISDVT ANEISTNGNL TPIDKRSSSS QMYRESNTNS TPGLEQRNVS KLSSVSAAEA  180
SRPRTSTTHL YQMSSQQPQA SIPSLRSIAS DMVGGNTSSA AHHAVCKNSI QASPAGGFPG  240
IPMQKQNPPT SSNNNSTIVN FSHFSRSSLL RVEKIKNKDK VSAATSSNPP ESILIESSCG  300
LMKESTSQCQ DVMAPSSVDM KPTASKPLEE PHTTKQSEAA AYQEDPSKND DRNSNHIPCE  360
SAIRPLPDVE KTTEPVVDSS VCSVNSVEKA SDDPTRVLKR KSRDTDDSEC HSEDVEEESV  420
GVKKKVAHGR GTGSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK VDKASMLDEA  480
IEYLKTLQLQ VQIMSMGAGL YMPQMMLPPG MQHMHAPHMA HFSHMGMGMG MGMGLGMGFG  540
MGLPDMNGGS SGYPMLQVPP MQGAHFPGSP MSGHTAFNGM IGSNLQMFGL PGQGVSMPMQ  600
RPPLVPISGG SFMKSAIGPN ACGAGGPVEN MEPAPGTSSK DSVQNMNSQI MQNINTSSSM  660
NQTSNQATNE GFGQSALVQK NVQALDVSTS RANRSTNGKD HDRRTEILRA TILEWIFCLL  720
LIRGDTFTER GTSESMRLNL YNNPLSSSFK STITYCIDFG TSICTFTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22963.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302325.10.0PREDICTED: transcription factor PIF3 isoform X1
RefseqXP_011466209.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A2P6R7W80.0A0A2P6R7W8_ROSCH; Putative transcription factor bHLH family
STRINGXP_004302325.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-44phytochrome interacting factor 3