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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22897.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 39956.5 Da PI: 7.8386 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.7 | 4.4e-08 | 265 | 305 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L mrna22897.1-v1.0-hybrid 265 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 305 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.212 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.74E-14 | 262 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.2E-13 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-12 | 264 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-5 | 265 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.20E-5 | 278 | 310 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAQQHWGGKS LAAEQLCQVP FIISRPFSMN SLINSAFVVD DHHQNKARPA ATATCSIESL 60 DCLFSATNSN TAEDTTCLDQ DDAINSTIAP NCRRSNLWNF GTGSTTTAVS SESETTNNAS 120 RPNKETQSFS KRCRNDDQSD QLKFYAENYS QHFDLLQTDS STTTTEGGGF RLISENPPKA 180 KKLKSSSDQK STTPSTTNIN FQQPTSSSLS GSATDQEPDP EVIAQMKEMI YRAAAFRPVN 240 LGIEMVERPK RKNVKISSDP QTVAARQRRE RISERIRVLQ KLVPGGSKMD TASMLDEAAN 300 YLKFLRSQVK ALENLGQKID SMSNCLPPAS FAFSFNPSFP MQTHHVPLHL HPNHNIHQPP 360 N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 270 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22897.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463350.1 | 0.0 | PREDICTED: transcription factor bHLH87 | ||||
TrEMBL | A0A2P6RXS0 | 0.0 | A0A2P6RXS0_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004297624.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna22897.1-v1.0-hybrid |